SimpleSearch - Line and FST details
Line specific information
| Line ID | 600H03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N457591) |
| Segregation Analysis | 50:47:36 |
| Confirmed for Hit | At5g46210 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At2g06040
| Sequence (A. th genome BLAST matches underlined) | >24-K023925-022-600-H03-8409 CCCGAAGTTCCCGAGGTTTACCGAGAGTTGGTCAAAATCAGCTGCTTCAGGGTCTGACCT CTATGGGATCCTCCCTATAGTGAGAGCCCCGANTCCTCCTTTGCTTTCGCTTGCTTGTTG GATTAATTTTGTGGAGGNGCCTATTACTCTTAGGGGGGGGGGGGGGGGGGAAGCATGTGG GCTCGACGCCTTTTGTACTTTTGTATAGTTTTGCCTCGCGACACTAAGTTAATGAGGTAG GTGTATTGTGGTCGTCTTAGCTTCACATAGTTTTTGATAGTGAGTATTTGGACGTCCGAT AATTGAGGTCTTAATTATTGCCACGAACATCGTTTGCTCTTGTGGGTATCTATGTCCTGG AGACGGTTGGTTTTGGGGGCCCTAATGTTAACACTTCACGGTGCATAGTTGGGTTTTACA TGTTTCAGTTATTGGCGATAATGATTATGTGGAGCGCAAATAGCGCGCTGCTTCTCTGTC GCTCTAATCGCAACTCATATTGTGTCTCTTGCAAAAGCTATGGCTGCGACTTGTGTGTGA TACTACGAGCTGCTTATATCTTTTGAGGCGTCTAACTTTGGACTATAAAACGCATTAAGA TGACATATCTGATCTTAAGGTTTGAAGATGATTAGCTTAGGATCGCTACTCGCAGAACTC TGTCCCTTTAGTGTCAGTCTTTGCTCATGACCTGTGCATTTATTACTGATCTAACATCAA AGGAACTTTGTTCTCAGGATCTCGTTGACCTGATTTGTTTCTTTGAAACTTGCTATACTG TGTGTCGCCATGTGCTGCCCCGACCTTCGTAATTGTCCGTTGTCTTCATACTGATATCTT TTGTTATTTATTACTTGTTTGGCTCATCTAGCTTATTGACACAGGTTGTCAACTGTTATC TATTCGTTCTCCCTTTAAATGCCTAGTCTTGCTTTGTTATTGGAATTGGATTCTTTGATA AATTGTTCGTAGTCTACCATTTTACTAACATTCATTTGCTGGCTGCCAGAGTCCGTCTGC CTCTCTATTTCGCTCATGAGTGTATTCATATGCGTGGATTCACCATATCTCTCCTCTTGT ATGCTAATTCACTGTCCTACGAGCGTGGGCCTTTGTTGTCTATCTTCTTTATCTGTTT |
| GenBank Accession | BX892304 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:2353334 - go to primer design |
| BLAST e Value | 2e-16 |
| Hit Clone Code (BAC ID) | F5K7 |
| Hit Gene Code | At2g06040 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | F-box/LRR protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At5g46210
| Sequence (A. th genome BLAST matches underlined) | >24-K023961-022-600-H03-8409 CTCTTGATCGTGTCTCTTAGTCCCCAGCGTGTTGTGTTAATGTTGGTTACCCATGCAATG AAACTCTACCTTTGAAGACATTAAAGATTCCACCAGCATAGAGGACAAGGAGCTGAGGAG GACTTTGCAGTCGCTTGCCTGTGGGATCCTCCCTATAGTGAGTCGTATTACTCCCGGGNT TGGGGGGGGGTGGTAACTCAATGNNNTTACCACCNTNNNNAGAANNANNNNNNANNNNAA NNNNNCCCCNCNNNAAANCGNATTGNNNNNNANNNNNNCACAAANNAAAANNNNAAAAAC GTGGNGGNNGGTGTNGCGCTTTNAGGCCGGGNNNNGGGNGGNGCGGCACTAGGTGGGGAG CNAGGAGAGAAGANAGTGCGNNCGAATCTTGTATGCGTAGGACTGGGAGGGGAGCGTAGA AAGATCGTTGGCTACACAACACGCGGCAGAGAAACAGCAAGCGACAGTACCAGTAGGAGT CAAAGAGACTGCGACAGTAG |
| GenBank Accession | BX892305 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:18732630 - go to primer design |
| BLAST e Value | 9e-41 |
| Hit Clone Code (BAC ID) | MCL19 |
| Hit Gene Code | At5g46210 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cullin4 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX654249 [GenBank] |
|
Last Updated on 10.06.2021 13:37 |
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