SimpleSearch - Line and FST details


Line specific information

 
Line ID 608D10
Vector Used pAC161
Line Availability available as T3 set from NASC (N458318)
Segregation Analysis 50:45:41
Confirmed for Hit At5g25420
Parent of DUPLO pair none
Parent of pair(s) 73593, 73597, 73599, 73602, 73603, 73604, 73605, 73606
Note

Gene hit At5g25420

 
Sequence (A. th genome BLAST matches underlined) 
>70-K036619-0022-608-D10C-8409
CCATTTGGACGTGAATGTAGACACGTCGAAATAAAGATTTCCGAATTAGAATAATTTGTT
TATTGCTTTCGCCTATAAATACGACGGATCGTAATTTGTCGTTTTATCAAAATGTACTTT
CATTTTATAATAACGCTGCGGACATCTACATTTTTGAATTGAAAAAAAATTGGTAATTAC
TCTTTCTTTTTCTCCATATTGACCATCATACTCATTGCTGATCCATGTAGATTTCCCGGA
CATGAAGCCATTTACAATTGAATATATCCAATTGATGAAATAAATAGTTAATAAATGGTC
AAAAAAATATGTTTTAAAGTGAAAATTAAATTGTTTGTAGACTAACCAGCCAACCAGTAC
CACGACTAACAACTGATGGTGGAATTGGCGTCGCACTTCCATATCTTGCCGATGCATAGA
ACAAACCAGTCGACTACAATAGTACATAAAACTTATCACTCTTCATATTTAACCATAGTA
TGCTAAATTTTATTTTCCATCAGTTTCATGTAAAGAATAAAGTTAACTCAAAGAGA
GenBank Accession LM644506 [GenBank]
Graphic View Graphic view of gene At5g25420
Predicted Position of Insertion Chr5:8839348 - go to primer design
BLAST e Value 2e-143
Hit Clone Code (BAC ID) F18G18
Hit Gene Code At5g25420 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Xanthine/uracil/vitamin C permease
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g65550

 
Sequence (A. th genome BLAST matches underlined) 
>76-K021866-022-608-D10-8409
NNNNNCGTGATATCCGGACATGAGCCTTTACAATTGAATATATCCAGACTGCTCGACAAA
TTCAACTTTGTAACATATACATGATTGATATTTACGTTGATGTTGTGAGGCCATGGGACA
CCATTTAGAGTGAGATTGACTATTAGTCCAGCTCCATACTAGATATTTATATAAATGTTC
ATATAGATGATGAAATAAATAGTTAATAAACGGTCAAAAAATATGTTTTAAGTGACGATT
AAATTGTTGCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCACGGGATTACCCGGAA
ATGGAACCACAC
GenBank Accession BX655809 [GenBank]
Graphic View Graphic view of gene At1g65550
Predicted Position of Insertion Chr1:24368658 - go to primer design
BLAST e Value 4e-46
Hit Clone Code (BAC ID) F5I14
Hit Gene Code At1g65550 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Xanthine/uracil permease family protein
Insertion Classification CDSi
Confirmation Status failed
Other FSTs Supporting this Hit BX655809 [GenBank]


Last Updated on 10.06.2021 13:37