SimpleSearch - Line and FST details


Line specific information

 
Line ID 616A12
Vector Used pAC161
Line Availability available as T3 set from NASC (N459052)
Segregation Analysis 50:42:29
Confirmed for Hit At3g16480
Parent of DUPLO pair none
Parent of pair(s) 392

Gene hit At3g03195

 
Sequence (A. th genome BLAST matches underlined) 
>89-K021912-022-616-A12-8409
AGCCATTTACATGAGGCCATTGACTATGGGATCCTCCCTATAGTGAGGCTATGGGATCCT
CCCTATAGTGAGGAATATTTGGAAGGAAAAAAAATCGGCAAATAAGAATGAGCCATCTCT
CACCGCTCTCTCCTCGTGCACAGCTCTCTGACTCCGTTAACTTCCGAGTCTCCGAGCATT
CTCTCTCTCTTTCTCTTTCTCCATCGCCGCGACTCGGCTCAGCTCTGAGAACGGCGCAAG
CTTAGATTGCCGGAGAAAACTTTATGCAATGTAATGTCTTCTTCTTCTTTTTTTTTCGTT
TCTTTCTAATTCGTCTTCGTCTGCTTCTTCTGCAAGCTCGTGTTGTTACTCATCTCTCTG
CATCGACGATTTTCTTCTATGGGATCCTCCCTATAGTGAGACTAGGGGATCCTCCCCTGA
GAGAGTATCTTTGATATTTTTGGAGTAGACAAGCGTGTCGTGCTCCAAAATGTTGACGAA
GATTTTCTTCTTGTCATTGAGTCGTAAGAGACTCTGTATGAACTGTTCGCCATT
GenBank Accession BX656542 [GenBank]
Graphic View Graphic view of gene At3g03195
Predicted Position of Insertion Chr3:5397031 - go to primer design
BLAST e Value 3e-102
Hit Clone Code (BAC ID) MVC8
Hit Gene Code At3g03195 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation long noncoding RNA
Insertion Classification TS2TE
Confirmation Status unknown

Gene hit At3g16480

 
Sequence (A. th genome BLAST matches underlined) 
>89-K021916-022-616-A12-8409
AGCCATTTACAATTGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAGGTACATAC
ACTTTGTAACATTCCACTTCTAAACTGATTATAACCAGACTTTTCTCTAACTGTTTTTTT
TTTGGTTTCCCCAACAAACCGGCGGAAACCCAGAAAACCATTCCTGGAAAACGGAAACCC
ACCTACCCTAAAGGGACTTGGAAAATTCCCCAAGGGAACCCCCCCAAAAGGGGGACNAAG
GGTTCCCCCCCTAAAGGGGAATGGGGGACCCCCCGCAAAAGGGGCAAACCGGAACCAAAA
AAAAAACAGGG
GenBank Accession BX656543 [GenBank]
Graphic View Graphic view of gene At3g16480
Predicted Position of Insertion Chr3:5602322 - go to primer design
BLAST e Value 4e-49
Hit Clone Code (BAC ID) T2O4
Hit Gene Code At3g16480 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation mitochondrial processing peptidase alpha subunit
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37