SimpleSearch - Line and FST details


Line specific information

 
Line ID 621C02
Vector Used pAC161
Line Availability available as T3 set from NASC (N459546)
Segregation Analysis 50:26:22
Confirmed for Hit At5g49850
Parent of DUPLO pair none
Parent of pair(s) 95122, 95129, 95141, 95146, 95150, 95153, 95156

Gene hit At5g49850

 
Sequence (A. th genome BLAST matches underlined) 
>11-K021953-022-621-C02-8409
NNTTTGGCGTATATCCGGAATGAAGCCATTTACAATTGAATATATCCTGACATGCAAGAG
GAAGAGGCATCGGATAAAAATGTGCACCAAGAGCCGTAATATACCCAGCCCCAAGAGGTG
CATACCATCCATGAAATCCGACAACGGCACAACCTTTGCTCTCAATGACAAATTCAACTG
AATCAGAAGTTCTCTCACCAAATGTCCTATGGGATCCTCCCTATAGTGAGACGTATTACT
CCTCCCTTTACTCCTAATTCTTAACACAATATATTTTCCTCTATATCTACACCAATTTTA
TTCTAAAAAATCC
GenBank Accession BX656891 [GenBank]
Graphic View Graphic view of gene At5g49850
Predicted Position of Insertion Chr5:20260607 - go to primer design
BLAST e Value 1e-80
Hit Clone Code (BAC ID) K21G20
Hit Gene Code At5g49850 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Mannose-binding lectin superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR813395 [GenBank] FR813395 [GenBank]

Gene hit MXI22

 
Sequence (A. th genome BLAST matches underlined) 
>11-K023191-022-621-C02-8409
CTGTCGAGTGGGAACCTCGCGAAAACAAGCTGAAGTTGTTATTACAGAGACCCCCGATAC
ATACAGCCTTGTTGTGGTTCCAACATATGAATCTATAAGCTGCACCCTCTTTAGAATTAT
TGATCTATACGAATGAGTCAAAATTACTTTCACCTTATGTCCTATGGAATCCTCACGAGG
GGGGGG
GenBank Accession FR813396 [GenBank]
Graphic View Graphic view of sequence FR813396 of line 621C02
Predicted Position of Insertion Chr5:20551124 - go to primer design
BLAST e Value 0.93
Hit Clone Code (BAC ID) MXI22
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit FR813396 [GenBank]


Last Updated on 10.06.2021 13:37