SimpleSearch - Line and FST details
Line specific information
| Line ID | 621F10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N459590) |
| Segregation Analysis | 50:47:46 |
| Confirmed for Hit | At5g38780 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 4554, 10025, 10061, 10914, 96560 |
Gene hit At5g38780
| Sequence (A. th genome BLAST matches underlined) | >78-K021953-022-621-F10-8409 GAATATATGTAACTATGATGATTCTGTTATTCCTATGGGATCCTCCCTATAGTGAGACGT AGTACTCACCCCTTTAGACAGATTTGGGGACCCCCTGAATTTTCCGCCCTAGGGGGACAA AGGAAAAAGGGGCCAACCGGGGGGAGGGGGAGACTGCGCACAACCGGGCCCAGGGAGCGC CACACAGAGGGGGGGGGGTGACCCACCACGGAACACAAGGATACAGGAGGCACACAAGAC AGTACTAAAGGTCAACAAAAACGAAACAACAGGAAATCAGCGGAAGACCACAAAATACAA GAGATAGAAAGAAAAAAGGTAATAGACGAATACACTACAGAACCTCAAACGAAGACAAAT CACAAAAGAAAGAACAGCACACAGAAAGAAGGAGAAGGAAAAAAAAGGCCAAGACAGAGA GGAGGCAAGAAAGAGACGAAACAAAACTACCCGAGACAAAAAGTAAAAAGAAGAAAAAAG AGGAGCAACTAAGAAAACAAATAGAGACAGAAACAACCGTAGCAAGTGACACCAAGGCAG CGCAGGAGAACAGGAAGCACAAGCCGCATACAATGGACCAAAGCGACA |
| GenBank Accession | FR813418 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:15530195 - go to primer design |
| BLAST e Value | 1e-06 |
| Hit Clone Code (BAC ID) | MKD10 |
| Hit Gene Code | At5g38780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit MPH15
| Sequence (A. th genome BLAST matches underlined) | >78-K021950-022-621-F10-8409 AACTATTTTAATATATGCCTGATTTGGATGTGAACCAGTTCCGTCCTAGGGATGNATCAT GAGGCATAAGGCGAGCACTCCGTAGACATCAGTTCAAGAAACAATTGTCTGTGGAAGTCA CAGACTTTTCATCAAGCTCTTATGCGAAGGCTCTTATGGGATCCTCCCTATAGTGAGACA TGAGAGGAACAGTATCTCAAAGGTTCTTCTTAATTGCGAGAGAAAGGCTTGCGGATTAAA ATCACAGAAAGCTATTGCTTGTGCTCAATCTCAGGCCGTGGCTACACAAGCTTCTAAGGA ATCCACCCTATACGGAGGATTGAGAAAGCTTAAACGACATAGTAAATAGGCAAGAATCAC GAAAATCAACACACCCGCGAGAAATAAAAATCGAAAAAAAAGTGATCAAGGAGCGACATA ACAAAAATAATATACAGCGGGCCAATTAGCGAAGCCAAAGTTAAAAGCATAAAAGTATGA AGATATATA |
| GenBank Accession | BX656964 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:2060111 - go to primer design |
| BLAST e Value | 1e-40 |
| Hit Clone Code (BAC ID) | MPH15 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
