SimpleSearch - Line and FST details
Line specific information
| Line ID | 625F11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N459975) |
| Segregation Analysis | 50:48:36 |
| Confirmed for Hit | At1g54080 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 2911, 2934 |
Gene hit At1g54080
| Sequence (A. th genome BLAST matches underlined) | >86-K022320-022-625-F11-8409 TATCCGGAATGAGCCATCATAGCTTGTTGAATCATAGCTTGTTGATGTTGCTGTTGTTGT TGTTGTTGTTGCTGCTTAATAAGCCTTTGATTCTGCATTTTTTGTGTTTCTTTCTCACTG CGATAAAAATATCTCTTTTGTTTCCCGAGAAAATTCCCCTTAAGCTATGGGATCCTCCCT ATAGTGAGACTAAGGAATCCCCCCTATAGGGGGGAAGGGGGAATCGCCATTTTTAGGGGA ACATAGAAAGCGGGGGGATATGGGATACTCCGAATAAAAAGGGTCCGGACATCAACATTA TAGAGTAGAAAAAAACTCCAATGGGATCCCCCCAAAATTGAGGAAATGGAAACCCCCCAA AGAAGGGAAGCGTGAAAACCACATATTATAGGAGATGACAGAAAATAAAAAAATA |
| GenBank Accession | BX657672 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:20186776 - go to primer design |
| BLAST e Value | 2e-47 |
| Hit Clone Code (BAC ID) | F15I1 |
| Hit Gene Code | At1g54080 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | oligouridylate-binding protein 1A |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g01480
| Sequence (A. th genome BLAST matches underlined) | >86-K022316-022-625-F11-8409 ATATTAATGCTTTTGTGCATTTTGCGTGTTGGCTCATGAAGTAAAATAATTTCACTATGG GATCCTCCCTATAGTGAGACAAAGTGATCCTCCCTTTAGAGAGCTATTGAAAGTATATAT CTTACACGTGTGATAAAGTTTGGGGAAAGAGTCCAAACTTGATACTAATAACTCGTTTCG ATTTAGAATTGGGGGGGCCAGAAAAGTATGTGAAAGTAACATTAATGAAATCTGTCCTAA CCATTATCCATTATCATATACTATGGAATCCTCCATAAAGAGA |
| GenBank Accession | BX657671 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:177037 - go to primer design |
| BLAST e Value | 3e-50 |
| Hit Clone Code (BAC ID) | F22L4 |
| Hit Gene Code | At1g01480 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | 1-amino-cyclopropane-1-carboxylate synthase 2 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At1g05620
| Sequence (A. th genome BLAST matches underlined) | >86-K022083-022-625-F11-8409 NAGCCATTTACAATTGAATATATCCTATGAGATCCTCCCTATACATGAGCTAAGTAGATC CTCTCCTATACCGAGATAGGCTTATAGCTAAACCTTAAACCCCAATCTTTTGTTTTGCTA ACACTATGGGATCCTCCCTATAGTGAGACCANATCACCCCTCCAAAAGGAAATCAATCTA TACTCTCCATAAGGGATTCCCCATAAAGAGAGGAA |
| GenBank Accession | BX657670 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:1678638 - go to primer design |
| BLAST e Value | 4e-18 |
| Hit Clone Code (BAC ID) | F3F20 |
| Hit Gene Code | At1g05620 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | uridine-ribohydrolase 2 |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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