SimpleSearch - Line and FST details
Line specific information
| Line ID | 626C01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N460025) |
| Segregation Analysis | 50:37:26 |
| Confirmed for Hit | At3g19130 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 97077, 97079, 97080 |
Gene hit F17I14
| Sequence (A. th genome BLAST matches underlined) | >03-K022016-022-626-C01-8409 NNNAAGTGTAATTCGGACATGACCATTTACAATTGAATATATTGTAAAAGAGACAGATTC TGAACTGATTGTTTATCAACGATTTCTTGTAATCTCTAAACCAAAATACTATGTCACCTA TGGGATCCTCCCTATAGTGAGATANTGGGATTGTGCCTCATCCCTTACGTCAGTGGACAT ATCACATCAATCCACTTGCTTTGAAGACATGGTTGGAACGTCTTCTTTTTCCACAATGCT CCTCGTGGGTGGGGATCCATCTTTGGNACCACTGTCGGCAAAGGCATCTTCTACGATGCC CTTTCCTTTATCGCAATGATGGCATTTGTATAAGCCACCTTCTTTTTCCACTATCTTCAC AATAAACTGTCAGATACCTGGGAAATGGAGTCC |
| GenBank Accession | BX657741 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:3021523 - go to primer design |
| BLAST e Value | 5e-27 |
| Hit Clone Code (BAC ID) | F17I14 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At3g19130
| Sequence (A. th genome BLAST matches underlined) | >03-K022321-022-626-C01-8409 ATGAACCATTTACATTGAATATATCCTGCTGCATCATCATCATCGCCGCCCCTGTTGGAT ATTGCATGGCCCTCATCCACTGTTGCTGTTTCCGTAGCTGCTGCAGCGATTGTTGAAGTG AAAGAGGGATTCTTCTCTATCCCGATTTTCAGTGCACATCTCTTACTCTTCATTTGGGTA GAGAAGATGGATCATATAACTGTCTGTTTCATAACGCAAACTCTTCCCCTACAATCCTTG TTATTAACTACACTACAGAACTCAAACAACACTCTCATATTAATTTGTCTTTTTTTAATC CTATTTCATACAGTAATATCATACATACTAATCAAAACACTTCTAATTATACACTTAACT TTTAATAACTTACTATATATATACATTACTTTT |
| GenBank Accession | BX657743 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:6613653 - go to primer design |
| BLAST e Value | 4e-18 |
| Hit Clone Code (BAC ID) | MVI11 |
| Hit Gene Code | At3g19130 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RNA-binding protein 47B |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T15B16
| Sequence (A. th genome BLAST matches underlined) | >03-K022317-022-626-C01-8409 GNAGCCATTTACATTGAATATATCCTGAAATCTACATGATATTCAAAGCCATATTAACCA ATTGAAAAACCCTTATAGGCTTATAGCTAAACCTTAAACCCTAATCTTTTGTTTTGCTAA CACTATGGGATCCTCCCTATAGTGAGCCTATACTATCACACCCGAAAACCGAAAATCCGA ACCCAAAAAACCCGATCCGAACTTGAAGTCTTAAAATACCCAGACGGGTTTTAGATTTCT AAAACCGTAGAAACCCGAACCCAAAAAATCCAATCCCAATACCCAAACGCCCATGCCTAT GGGATCCTCCCTATAGTGAG |
| GenBank Accession | BX657742 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:692470 - go to primer design |
| BLAST e Value | 5e-64 |
| Hit Clone Code (BAC ID) | T15B16 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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