SimpleSearch - Line and FST details
Line specific information
| Line ID | 626C07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N460031) |
| Segregation Analysis | 50:32:25 |
| Confirmed for Hit | At3g18450 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 9650 |
| Note |
Gene hit At1g05620
| Sequence (A. th genome BLAST matches underlined) | >51-K022317-022-626-C07-8409 TATATCCCGAAATCCACATGATATTCCAAGCCATATTAACCTATTGAAAAACCCTTATAG GCTTATAGCTAAACCTTAAACCCTAATCCTTTTGTTTTGCAAACCCCTATGGGATCCTCC CTATAGTGAGACCTATTAATCCCCCCTTTACACGTGAATGTTTACCCCCCAAAAAAACCG CCCCCCGGGGGGGGGGAAAAAACCAAGGGATCCCCCCTAAAAAGAGAACTAATTACTCTC CATCTTACGTGCTATGGGAAATATTCAGAAAACGGGTTAGTGCACGAATGAAGGATCTAC GCGACCCACTTTCACCAACAATAGCCGGACTCAGAACGAACGTAACGCATCAAGCGGCAA ATCCCATCAAACACAGCAGAGAACGTAAAACAAACCGTAACGTGCGGAGGGGAAAACACC AAACCCGACACCAGA |
| GenBank Accession | BX657750 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:1678635 - go to primer design |
| BLAST e Value | 1e-21 |
| Hit Clone Code (BAC ID) | F3F20 |
| Hit Gene Code | At1g05620 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | uridine-ribohydrolase 2 |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
Gene hit At3g18450
| Sequence (A. th genome BLAST matches underlined) | >51-K022321-022-626-C07-8409 CCACAATGTGAATGAACCTTTCGGTAGCCTGAGCATCCGGTAACCCGAACTTCTTTCGTA TCCTGGCCCTGAACATGTATGAATACACAAAACTTGCCCCGGTAAAAAATAGTGCTCCGT ACAACAACCCAGCTGTCGCACAAGCTGCGTGATAGAAATATGTTTACACACATGAGACAT TACAATCTATGAGTGTTTTTCTTAATAAAGGTTTGTGTATGAATGAATGACTTACGCGTC GCGCCTTCGTCAACGATCTCCGCAATCTGTCCGAACGTGACGCATGGAGCTATCAATGTG ATCACGGCTAATCCAATGCACAACAACAACAAGAACAGCAAAAAATGGAGAAACCTATCG TAGAATATACAATGTTTATTTTTTTATATAAATAGACAAAAGA |
| GenBank Accession | BX657751 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:6331467 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MYF24 |
| Hit Gene Code | At3g18450 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | PLAC8 family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g13590
| Sequence (A. th genome BLAST matches underlined) | >51-K022016-022-626-C07-8409 GGCATTGGTGCACTGCTGATACCATTTGAACAACGCCCATATTTATCCTTCTGATATGGC GTAGAACTTGTACGTAACTCAGGGATCTCACTTGATTGCATTATTGCGGTATGCCGATCA TCCTTCGTACCCTCCCCCCGAACGAGAACGCCCCCTCGACACCTGCCCCGGGACACA |
| GenBank Accession | BX657749 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:4377172 - go to primer design |
| BLAST e Value | 5e-36 |
| Hit Clone Code (BAC ID) | T6I14 |
| Hit Gene Code | At5g13590 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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