SimpleSearch - Line and FST details


Line specific information

 
Line ID 634C06
Vector Used pAC161
Line Availability available as T3 set from NASC (N460798)
Segregation Analysis 50:46:28
Confirmed for Hit At1g45050
Parent of DUPLO pair none
Parent of pair(s) 3403, 3571, 7116

Gene hit At1g45050

 
Sequence (A. th genome BLAST matches underlined) 
>43-K022834-022-634-C06-8409
CCATTTACATTGAATATATTGTACGTTGTAACCTAATCATAAAGATCGTTCATTACATAA
CTCAGATATTGAAAAATCCTAGATACTAATGAAAAGGATCTACACGCATGGGGGTATACA
ATAAAAACAGTTTTGAGTGATAACACTTATCAATAATCATCACCATATCTTAAAACTCAT
CATATTCACTTTCTTGTTTTCCTTATTCCTATTTATTTTCATCTTCAATCTTTCCTTCTT
CTTCCTTATCAATTTTTTTATCTTCTTCCTCTTTTTTCATTTATTATCATTTATACCCCT
CTACTTTCTATCCTCATTTATATCCCTAACCCAATCTTCCCTTTTTTACA
GenBank Accession BX658306 [GenBank]
Graphic View Graphic view of gene At1g45050
Predicted Position of Insertion Chr1:17032389 - go to primer design
BLAST e Value 6e-45
Hit Clone Code (BAC ID) F27F5
Hit Gene Code At1g45050 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ubiquitin-conjugating enzyme family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX658306 [GenBank]

Gene hit F4N21

 
Sequence (A. th genome BLAST matches underlined) 
>43-K022368-022-634-C06-8409
ACTAACCAAAACCGAACCCGGATTTCTTTTGGTTAATTTAGGTAACCCCCTATGGGATCC
TCCCTATAGTGAGACTATGGGATCCTCCCTATAGTGAGACATAGGGATCCTCCATTTAGA
GGGGTATATGGAAATTCTAATTTATTGTGACTATAGAGTGTAATGGGAATTGGGAAACTC
CGTTTTAACGGAAATTTGGATATTTGGAGGTAGTGGGAAAAAATAAATATAAAGAATTTG
GGATACTCCCTATAAATGGTGAATTAAAAAAAT
GenBank Accession BX658305 [GenBank]
Graphic View Graphic view of sequence BX658305 of line 634C06
Predicted Position of Insertion Chr1:24898999 - go to primer design
BLAST e Value 1e-18
Hit Clone Code (BAC ID) F4N21
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37