SimpleSearch - Line and FST details


Line specific information

 
Line ID 635H12
Vector Used pAC161
Line Availability available as T3 set from NASC (N460960)
Segregation Analysis 50:27:12
Confirmed for Hit At3g56520
Parent of DUPLO pair 1386
Parent of pair(s) none

Gene hit T22A6

 
Sequence (A. th genome BLAST matches underlined) 
>96-K023197-022-635-H12-8409
GAAGCCATTTACAATTGAATATATCCAGGTCCATGCCTACCTTGAGGGACGTTATTATCA
TCCTGCCAATAATAACAGTTACTTATAATCCCCACAAAGAAGATTTGGCAAGTCTTCTAA
CTATATTCATACTCGAAAATTTTATATTGTTTCACTAACTATCCATCTATAGACTATAAT
GCATACATTAAATATATTAATCGGAGCGGAACAAAATTTTCAATTAATTTTGAATATATT
ATGCCCGAGTCGTTACCTATGGGATCCTCCCTATAATGAGGAGNCGGACCCCTCACCCCC
GACCAGCACCGTACGCAACACAACCCCCCACCCGCCGCCCCTCAGCCGGATCACGTGCCA
CAACCCCCCCCCGCGCCACCGCGCGTTCCGGGGGAGACTCACCGCCCCCCCGCACGTCGG
GGGGGCGCACAACCCGGCCCTTCGGCACGCCCCATGAAGACCACCAACCCCCGAGCAGAA
CGAAGAACCCCGCGCGCCGTCCGAGCATCACACCCACCGCCACCACCTTCCCTCCAACCG
CCACCCACGCCTCCCGACGAACATCGCAGCG
GenBank Accession BX893066 [GenBank]
Graphic View Graphic view of sequence BX893066 of line 635H12
Predicted Position of Insertion Chr4:12598605 - go to primer design
BLAST e Value 5e-64
Hit Clone Code (BAC ID) T22A6
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At3g56520

 
Sequence (A. th genome BLAST matches underlined) 
>96-K023732-022-635-H12-8409
CGGACATGAGCCTTTACATTGAATATATCCTGATAATATCCCGGACATGAAGCCATTTAC
AATTTAAATGGCTATATCCCGGACATGAAGCCATTTACAATTAAATATGGTCATACTCAT
TGCTGATCCATTGCTGAACCAATTATACTTTAAAGCTTCTTCATCATCAGATAAACAAAT
ATTATCAGATTCTTCTTCTTCTTGCGCAATAAGAGTAAACCGACGCTTAATACCAACTAA
TGCATCATTATTCTTTGGATCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCACGGG
TTTAGACTTAATTGGAAACTCAATGGGTAATCATCAATAGGGAGGAACGGAAACCACTAA
TTAATGAAACATCAACATAAAAGAAAATACGAAAAAATAGTAAAAATATAAAAAATAAAA
AAAAGAGACAAATAAATATATATAAATACATAGGACCCGACGGAATAGAGTTGCAGAGTA
GAGACTATGAGACGTGGAAATATCGTGGAAAATATGGGAACAAACTAAAATATA
GenBank Accession BX893068 [GenBank]
Graphic View Graphic view of gene At3g56520
Predicted Position of Insertion Chr3:20947137 - go to primer design
BLAST e Value 5e-67
Hit Clone Code (BAC ID) T5P19
Hit Gene Code At3g56520 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX893067 [GenBank] BX893068 [GenBank]


Last Updated on 10.06.2021 13:37