SimpleSearch - Line and FST details
Line specific information
| Line ID | 642A10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N461546) |
| Segregation Analysis | 50:10:7 |
| Confirmed for Hit | At3g23870 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3516, 3535, 3552, 84299, 84304, 84309 |
| Note |
Gene hit At3g23870
| Sequence (A. th genome BLAST matches underlined) | >73-K022817-022-642-A10-8409 ATTTGGCACATGAACCATTTACATTGAACATCATCACATTTACCACTTTCTGATTCCTTC CCGTAGCGTCCTCTCATGTCTCACCTCCATCATATACTGATTTTTCATGGTCAATTTCCA CTACGCTATGATGCCTGATGAAACAGAACTTTCATATATATATCAATCTTCACTATGGGA TCCTCCCTATAGTGAGTCGTATTACTCACGGACCCGTGCGAGAGTGGTAT |
| GenBank Accession | BX659018 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:8621029 - go to primer design |
| BLAST e Value | 4e-15 |
| Hit Clone Code (BAC ID) | F14O13 |
| Hit Gene Code | At3g23870 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | magnesium transporter NIPA (DUF803) |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX659017 [GenBank] |
Gene hit F21P24
| Sequence (A. th genome BLAST matches underlined) | >73-K023271-022-642-A10-8409 AGCCCAAACTACTANATGTTTGCTCTCCACAAACCCATTTTCTGACAGAAATACTCAAGG AAACCTAGAGGAAGATAACTTTCTTATATATGTAAATCTTCACTATGGGATCCTCCCTAT AGTGAGNGCCCGGGGCGCCACCCCGGGGGGGGGGGGGGGCGCACCGCACGCCCCACCCCA CGCGACCGCTCGCAGCGGGCGGGAGCCGGGAGGATCCCCGAAAGGTCGGATTCAGGCGGG TCCCCTTGGGTCATCCCGCTCAGAGGGGAGATCGGGGGAGGCTCTCCCTGACCTCTC |
| GenBank Accession | BX893148 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:9803133 - go to primer design |
| BLAST e Value | 2e-04 |
| Hit Clone Code (BAC ID) | F21P24 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At5g43850
| Sequence (A. th genome BLAST matches underlined) | >73-K023272-022-642-A10-8409 CCTGCACTCTAATACTCATAAGGCCTTCTTTCTTCATAAGGCTGGTTTTGTAAGGTTTGA NNACTACCTTCATTATGTANTCCTACNCTCCTACTGTGTCTATGNNATCCTCCCTAT |
| GenBank Accession | BX893149 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:17628222 - go to primer design |
| BLAST e Value | 9e-32 |
| Hit Clone Code (BAC ID) | MQD19 |
| Hit Gene Code | At5g43850 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RmlC-like cupins superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At4g29530
| Sequence (A. th genome BLAST matches underlined) | >73-K023222-022-642-A10-8409 GGCTGGCTATAAAATGGCAGGAAACACGTTAACAAGCGTACCGTCGATTCCACTTCTTGA ACACGGCACAGGATCACAACCCAGAGGATTCCTTATACCCATGATCTTCTATATACAACC C |
| GenBank Accession | BX893147 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:14495902 - go to primer design |
| BLAST e Value | 1e-33 |
| Hit Clone Code (BAC ID) | T16L4 |
| Hit Gene Code | At4g29530 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Pyridoxal phosphate phosphatase-related protein |
| Insertion Classification | Promoter |
| Confirmation Status | failed, line belongs to a contamination group, please check line 563B03 |
Gene hit At2g39940
| Sequence (A. th genome BLAST matches underlined) | >73-K023292-022-642-A10-8409 CACAGTAAGCCCATTTACAATAGTAATATAGNATGACTAGCGAAAGTTTGGATTCCATCG CTCCCAACTTTCTTCTTCTTCCTCCCAATCCGCNCTCTTCTTCCTACGCGTGTCTTCTTC TCCCTCACTCTCTCAATCTCTATGGGATCCTCCCTATAGTGAGACGAATGANTCN |
| GenBank Accession | BX893150 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:16675758 - go to primer design |
| BLAST e Value | 2e-31 |
| Hit Clone Code (BAC ID) | T28M21 |
| Hit Gene Code | At2g39940 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RNI-like superfamily protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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