SimpleSearch - Line and FST details


Line specific information

 
Line ID 644E11
Vector Used pAC161
Line Availability available as T3 set from NASC (N461787)
Segregation Analysis 50:14:9
Confirmed for Hit At1g48030
Parent of DUPLO pair 6787
Parent of pair(s) none

Gene hit F20C19

 
Sequence (A. th genome BLAST matches underlined) 
>85-K023293-022-644-E11-8409
TTTTTCCTCCTTGAATGAACCATGCTGTCCTTGATTTTTTATTTTATCCGAGCTACTTCT
ATGAGGTGGTTTNNTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCNNNCNNNNNNNNNNNNNNNNNNCCCCNNCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNCCCCCCCCCCCCCCCCNCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCC
GenBank Accession FR813895 [GenBank]
Graphic View Graphic view of sequence FR813895 of line 644E11
Predicted Position of Insertion Chr3:9698648 - go to primer design
BLAST e Value 6e-14
Hit Clone Code (BAC ID) F20C19
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g48030

 
Sequence (A. th genome BLAST matches underlined) 
>85-K022719-022-644-E11-8409
AACCCCCGGGACCGTTGCCGATGGTGACGACGTGCATTTTCGTCATATCCTGATGAGGCG
TAGCCACGGAATAGGGAAAAGGATAATCTGAGAGCGTCATTGGGAGAGTTCGATAAGTTT
CTGGTGATAAGAAACGCCTTCCTCCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCA
CTGTATCTCATAAAACATGAAGCGAGAATGGCATCAAACACATAAGCGTATTATGAATTT
AAATTCGTGTCAGCAATAGTTGTAGAGCTTATAATATCTAAAGAAAATATTACAAACTGA
TGAGTTACTATTATAATCA
GenBank Accession BX659253 [GenBank]
Graphic View Graphic view of gene At1g48030
Predicted Position of Insertion Chr1:17718920 - go to primer design
BLAST e Value 9e-35
Hit Clone Code (BAC ID) T2J15
Hit Gene Code At1g48030 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation mitochondrial lipoamide dehydrogenase 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR813896 [GenBank]


Last Updated on 10.06.2021 13:37