SimpleSearch - Line and FST details


Line specific information

 
Line ID 645D01
Vector Used pGABI1
Line Availability available as T3 set from NASC (N461861)
Segregation Analysis 50:50:39
Confirmed for Hit At3g04040
Parent of DUPLO pair 12749
Parent of pair(s) none

Gene hit At5g62560

 
Sequence (A. th genome BLAST matches underlined) 
>04-K021383-022-645-D01-8409
AGGACAATGAGGAAGAATAAGGTTGATGCCTTAAAAAGAGGNGNNANAAGAATAGAATTA
GGGAGGGTCTTCAAAAAGGAGNGANGAGNNNTNGNCGTGTCGGCGGATCATCCTTTTGTG
GAGGTGGGTGAGTTTCTCCCAAAAAGAGCTCCATGAATTTGGGGTATGGTTGATCATTAG
TAAGGGGAGATGCTGGCGGTTGATTAGTGCGTTACACTAATAGTGTTACTTATACCCAAA
AAAGTGAAGCATGAAATACTCAAGAATGTGAGAGTGGTTACTATCAGGGTTACCAATTCC
GTTTTGTTGTCCGTTGATTTAGCTGAGAAACAAAAATCAAATAGATAGTTTGCCGGTTTA
AACTAACTTGGTTCGGTTGAT
GenBank Accession BX659333 [GenBank]
Graphic View Graphic view of gene At5g62560
Predicted Position of Insertion Chr5:25109551 - go to primer design
BLAST e Value 6e-48
Hit Clone Code (BAC ID) K19B1
Hit Gene Code At5g62560 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RING/U-box superfamily protein with ARM repeat domain-containing protein
Insertion Classification Promoter
Confirmation Status unknown

Gene hit At3g04040

 
Sequence (A. th genome BLAST matches underlined) 
>04-K021429-022-645-D01-8409
AGCCATTTACAATTGAATATATCCTGACCAAGTTACATGAATATATGAAGTTTCAACAAC
ACAACAACCCAAAGAGAGATTCTGAATGTTTTTCAAGCAAGTTCCAAACTTTAAACTGTT
GTTTCCTCTATTCTGACTTAAAAAACATATCACACCACAAAAAGAATGTCGATTGTTTCA
GCATTAACCACACAAATCGAGCATCACATTCACCCCGACCTTTTCTTAGAACAGGTTGCA
TATATATTTTACCCTCTTAAGTCATTAAAAGAAGAAACAATCAATGATGGGACACCAATT
CACAAGAAGATACCAACACAAAGAAATCAATCAGTGAGAGATTAAAAGAAATACCATGGT
GAAACCCAATGAAAGCACTTGCAGTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX659334 [GenBank]
Graphic View Graphic view of gene At3g04040
Predicted Position of Insertion Chr3:1048545 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T11I18
Hit Gene Code At3g04040 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transmembrane protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37