SimpleSearch - Line and FST details


Line specific information

 
Line ID 646C02
Vector Used pAC161
Line Availability available as T3 set from NASC (N461946)
Segregation Analysis 4:2:2
Confirmed for Hit At5g39860
Parent of DUPLO pair none
Parent of pair(s) 7016, 7055, 61603, 93818, 93819

Gene hit At5g39860

 
Sequence (A. th genome BLAST matches underlined) 
>11-K022589-022-646-C02-8409
ACAAATAACATTACATGAGTAAGCTTCTATTAACGGCGGCCTTCAGTGCTATCGTCATCG
AAAGATTCAACAAGCTGATCACAATCGCATCTCTCAGATTGTCAACTTCTCCGTTCCATT
ACGTATGTAATTGCATGTCTCTTGCGATACTTTCTAGGCTGATGCCTTCCACAACAAAAA
CAAAATAAAATCATATTCATTATAATATATGTTTTTTGAACCAATGCATGCGCTTTTATG
CGTTTGCAGATGCATGCAAGCTGATGATTTTGATGTAATCTCTTATGTAAATATGGAAGA
AAAAGGTTGTGAATATTGGTATATATGTTCCTTAATGTCCGGAGTCAAAAGTTCCGACTT
CTTTTTTCTTTCTTGTTTGATTTTAGTGTCCACTCTTCTTTTTACAAAACTTTTGTTCTT
TCCTTTTTTGGAAAGATTAACACGATGAAAAATGATAAATGGTAATCATACTTGAAAACA
TGCATATTTTA
GenBank Accession BX659455 [GenBank]
Graphic View Graphic view of gene At5g39860
Predicted Position of Insertion Chr5:15958313 - go to primer design
BLAST e Value 7e-137
Hit Clone Code (BAC ID) MYH19
Hit Gene Code At5g39860 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation basic helix-loop-helix (bHLH) DNA-binding family protein
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR813928 [GenBank] FR813928 [GenBank] BX659456 [GenBank]


Last Updated on 10.06.2021 13:37