SimpleSearch - Line and FST details


Line specific information

 
Line ID 646F05
Vector Used pAC161
Line Availability available as T3 set from NASC (N786508)
Segregation Analysis 50:3:2
Confirmed for Hit At4g34220
Parent of DUPLO pair 2702
Parent of pair(s) none

Gene hit At5g10490

 
Sequence (A. th genome BLAST matches underlined) 
>38-K023086-022-646-F05-8409
CCGGACATGAGCATTTACATTGAATATATCCTGAGTTCCCGTGAGTTCTTTAGCCTCTGT
TTCCATGGGAGGAGAATGTATCTCTTCTTCTATTGCAAGTGTTC
GenBank Accession BX659533 [GenBank]
Graphic View Graphic view of gene At5g10490
Predicted Position of Insertion Chr5:3300472 - go to primer design
BLAST e Value 2e-23
Hit Clone Code (BAC ID) F12B17
Hit Gene Code At5g10490 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation MSCS-like 2
Insertion Classification CDSi
Confirmation Status unknown
Other FSTs Supporting this Hit BX893396 [GenBank] BX659533 [GenBank]

Gene hit At4g34220

 
Sequence (A. th genome BLAST matches underlined) 
>38-K022589-022-646-F05-8409
GNAGCCATTTACAATTGAATATTCCTGACTACCCGCGAATTCTTGACCATCTGTGTTCCA
TGGGGAGGAGAATGTATCTCTTCATCAATTGGAAATGTTCACCTTGAACGCTTCTATGGG
ATCGAACATAGATGAATTCACCGTCACAACACTCGGGAACTTGGGGGTTGAACACGGAGT
CCGGTAGTGACCCGGTGAAGAAATTGCTATGGGATCCACCCTATAGTGAGTCGTATTAAT
CACGGGCCAGCACATGCCTGGGTCGATCTCGCCTTTAACAACCTCACAGGCCCAATCCCA
AGTTCCCTTTCTTTACTTAACCAAAAGGCTGAGTCTTTTTCCGGTAACCAAGAGCTTTGA
GGGAAGCCATTGAAGATCCTTTGTTCAATTCCTTCCACTCTTTCAAACCCTCCAGATATC
TCTGAAACTACTTCACCAGCAATACCAGTAAAACCAAGAGGTACGACTCCAGAAAACCCT
TAGACAGAAAACGCAAATCAAACAGGAAGAAGCA
GenBank Accession BX659532 [GenBank]
Graphic View Graphic view of gene At4g34220
Predicted Position of Insertion Chr4:16383542 - go to primer design
BLAST e Value 3e-105
Hit Clone Code (BAC ID) F28A23
Hit Gene Code At4g34220 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat protein kinase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37