SimpleSearch - Line and FST details
Line specific information
| Line ID | 648G02 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N462186) |
| Segregation Analysis | 60:20:14 |
| Confirmed for Hit | At3g29060 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 5096, 5099, 5104, 5145, 7516, 85323, 85324 |
Gene hit At4g09605
| Sequence (A. th genome BLAST matches underlined) | >15-K022821-022-648-G02-8409 TGATGCTGTTGAGTCCCAATATATGGGCAGCGAAGGCCATTTAGTTATAACATCCGATTT GGTGTATCTAGATTGGTTATGAAATTCACATACTATGGGATCCTCCCTATAGTGAGCCTT ATTAGGTCTTCATATTGTCCTTCCATCTCTGTATTACTGGCTAAAGAAGCTGATGGATTC GTATTTTTATATGATCCCCGTCTTGTGGAATCTGCCTATGATCAATTTTTTCATGGATCT TTGTTGTCTCTTGGCGGATTATCTACTATTGCTACAACACGGACATGGTGTATT |
| GenBank Accession | BX659882 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:17706875 - go to primer design |
| BLAST e Value | 1e-09 |
| Hit Clone Code (BAC ID) | F19F18 |
| Hit Gene Code | At4g09605 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | long noncoding RNA |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
Gene hit At3g24740
| Sequence (A. th genome BLAST matches underlined) | >15-K023297-022-648-G02-8409 CCCCCCAACGGCCCGGTGTATCTGAATATGAGGATCCCCGATTCCTCCGTGCCCTTGTCC TGTGGGATCTTGATCCACCACCAATCCCCCTAGACCTATGGGATGCTCCCAATATTGAGA GACTATGGGATCCTCCCTATGGTGAGACAC |
| GenBank Accession | FR814073 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:9033381 - go to primer design |
| BLAST e Value | 1e-12 |
| Hit Clone Code (BAC ID) | K7P8 |
| Hit Gene Code | At3g24740 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cellulose synthase, putative (DUF1644) |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At3g29060
| Sequence (A. th genome BLAST matches underlined) | >15-K022836-022-648-G02-8409 CGGAGATGATTTTATGATCTTTGTTTTTTTGTAATCAGGTTGGAGAATGAGCATTTGAAC AACGTGGGGAAATACAGAGCCTTCAAGTCTGTACCTTTGCCTTTTCAAGAACTTGGAGGA AGTAAGAGCGTGTAAATAAAATTTTAACATCTCCAAAAACAAATACAAAAAAAACAGCTA AATTTGGATTAATTTCATAACTACATCATATGAAAATTGACTATTTTCAATTTTTTCAAC AAATTAAATTAATCTCTTGGTGTTTAATCTTTGTGAATGTACCAAATTAATGATGAATAC ACCAAATGTATATTGGGTCCCATACTTTGAACAGTTTATTCACTACCCATCTCATCCCCA TATATTTTTAACACTATCCAAATGCGCCTACTCACTCGTACTAACAATCGCCTGACGACA TGCCAAACAACCCCAACCACCTGCCCACCTTACATCATACACCATGCAACCATCTCACCA TCCCGCGCCCACCAAGTCTAATAACCCACCTCCTACAATTCACCCCCCCCCCTCCCCACC ACCAACTCGAATCCCAATCCCCAC |
| GenBank Accession | BX659883 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:11045094 - go to primer design |
| BLAST e Value | 9e-155 |
| Hit Clone Code (BAC ID) | MRI12 |
| Hit Gene Code | At3g29060 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | EXS (ERD1/XPR1/SYG1) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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