SimpleSearch - Line and FST details


Line specific information

 
Line ID 649A11
Vector Used pAC161
Line Availability available as T3 set from NASC (N462219)
Segregation Analysis 50:49:47
Confirmed for Hit At3g21990
Parent of DUPLO pair none
Parent of pair(s) 85889, 85906, 85907, 85909, 85910, 85911, 85912, 85913, 85914, 85915, 85916, 85917, 85919, 85920, 85921
Note

Gene hit At4g20530

 
Sequence (A. th genome BLAST matches underlined) 
>81-K023273-022-649-A11-8409
AGCCATTTACAATTGAATATATATGAGTGTATACAATTGAATATTAATATTTACAAAGTG
CTTTGAGTGTTTGGAAGGGATTTT
GenBank Accession BX893677 [GenBank]
Graphic View Graphic view of gene At4g20530
Predicted Position of Insertion Chr4:11049489 - go to primer design
BLAST e Value 2e-14
Hit Clone Code (BAC ID) F9F13
Hit Gene Code At4g20530 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation cysteine-rich repeat secretory-like protein
Insertion Classification CDSi
Confirmation Status failed

Gene hit At3g21990

 
Sequence (A. th genome BLAST matches underlined) 
>81-K022837-022-649-A11-8409
AGCCATTTACATTGAATATATATGAGTGTATACAATTGAATATTAATATTTACAAAGTGC
TTTGAGTGTTTGGAAGGGATTTTGAGGAAGTTTCCAGAGTGTTGTGACGGTAAACAAGGA
GGGAGAGTTTTGGGTACGATCTGTAACTTTATGTATGAGTTATATCCTTTTCTTAGAAAC
TAACAACAACAGAACAATGAGAGCTCCATATTAAATGAAAGGGTTCTATGGTATCCTCCC
TATAATGATTCTAATTACTCATGTGCGTGCGAGCAAACATGATGACGGAATGGCTGGTGC
CGGCTGGGGATGTATCTATCTTGAGTATCCATCNATATTCTAAACATTG
GenBank Accession BX659928 [GenBank]
Graphic View Graphic view of gene At3g21990
Predicted Position of Insertion Chr3:7750276 - go to primer design
BLAST e Value 7e-94
Hit Clone Code (BAC ID) MZN24
Hit Gene Code At3g21990 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation cysteine-rich repeat secretory-like protein (DUF26)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX659929 [GenBank]


Last Updated on 10.06.2021 13:37