SimpleSearch - Line and FST details
Line specific information
| Line ID | 649D05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N462249) |
| Segregation Analysis | 50:43:38 |
| Confirmed for Hit | At1g30810 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At1g30810
| Sequence (A. th genome BLAST matches underlined) | >36-K023088-022-649-D05-8409 TGATGCGGATAGTGAAAGATATATCAGCCAGCTCTTGATCGTCCTATTTTAACACAGTTT GAGAGTATCAACGGGCTTCAAATGTTTGGTTTCCTCTCACCCTCTATAGTTCAGGTAAGA AATCTAAATCCAAGCCTTGTTCTTCTTCATTAAAAAGCTATTCATGATGTTAACTCTTAC ACAACTTAACGCTTCTCTACAGGCCATTGAAGCTCTTGACCCAAACCATCGACTATGGGA TCCTCCCTATAGTGAGACTAAGGAATCCTCCCTATATTGAGACTGCGTAAATCTACATTT TCGAAAAGACATAAAATATAAAGGAAAAACCCATTATCAAAATCTCAGAAAACTTCAATA ATCTTAACTAACAATTATTATTTAATAATAATTATAAGAACAACTATTACATCTAACAAA ACAATCAATCTATTCATTGAAAAAAAATGACACATATATCAATACTCTCCCAACATTTAA ACATTCAATAATAATATCACATATATACAT |
| GenBank Accession | BX659969 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:10938489 - go to primer design |
| BLAST e Value | 2e-106 |
| Hit Clone Code (BAC ID) | T17H7 |
| Hit Gene Code | At1g30810 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX659968 [GenBank] BX893684 [GenBank] |
Gene hit At1g08110
| Sequence (A. th genome BLAST matches underlined) | >36-K023273-022-649-D05-8409 GATGGTCGTTGTTTATCAATGTGGTCTGTTTCTTGACATATATATAATGAGCTATGGGAT CCTCCCTATAATAAGGATAAGCAGGACCCCCTATTCCCCTTTTTTTTCCCTTCCCAAATG GAAATGGCCCCCACCGCATTAATAGCCAGTATGATCTGCCCTCTCTAGAGGGAGCCTGCA TTAATAGCCTGAAGGGGACACCCCCTCACACTACCACCTCCCCCCCCCACCCCCCCACCC CCCCCCACCACTCCACACACTCTCATCTCCCTCCCCCACTCCCCCCCTTTTCCCCCCACC CCCACCCCCCCACCCCCCAACCCCCCCACCCTCGCGCCTCTCCACACCACCACACCCCTC CCCCCCACCACCTTCAAAGAAAACTCACCCCCAAGCGCCCTCCTCTACCCCCACCCAACC ACAAAACGACCCTTCACAATCACACAACCACAAACCTCATCCCCTCCCCTCCACCCTC |
| GenBank Accession | BX893685 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:2537810 - go to primer design |
| BLAST e Value | 3e-22 |
| Hit Clone Code (BAC ID) | T6D22 |
| Hit Gene Code | At1g08110 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | lactoylglutathione lyase family protein / glyoxalase I family protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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