SimpleSearch - Line and FST details


Line specific information

 
Line ID 650C11
Vector Used pAC161
Line Availability available as T3 set from NASC (N462339)
Segregation Analysis 50:49:49
Confirmed for Hit At1g30720
Parent of DUPLO pair none
Parent of pair(s) 82433, 82470, 82505, 82523, 82540, 82541, 82542, 82543, 82544, 82545, 82546, 82547, 82548, 82549, 82550, 82551, 82552, 82553, 82554, 82555, 82556, 82557, 82558, 82559

Gene hit T5E15

 
Sequence (A. th genome BLAST matches underlined) 
>83-K021296-022-650-C11-8409
GNAGCCATTTACAATTGAATATATCCTGATTACATGGTACTTTTTTGATGCCGGACTGTA
TGTCCCTCGCTATGGGATCCTCCCTATAGTGAGACACCCCTATTTTACAATTAGACTATG
AGGCCCTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX660083 [GenBank]
Graphic View Graphic view of sequence BX660083 of line 650C11
Predicted Position of Insertion Chr5:13084860 - go to primer design
BLAST e Value 6e-11
Hit Clone Code (BAC ID) T5E15
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g30720

 
Sequence (A. th genome BLAST matches underlined) 
>83-K021277-022-650-C11-8409
GGGACGTATTTAGGCCGGTCGTGATAATACTGTTGACCGTGATGAACCGGGATTTCCCGG
AGTTGAAGCTGAAGAAAACCGATTGTACCGAGATGAGATGGATCGATTCGGTTCTGTTTT
GGGACGATTATCCGGTTGGGACGCCGACTTCTGTGCTACTAAATCCGCTATGGGATCCTC
CCTATAGTGAGACCAAAGGATTCCTCCCTTTTTCCCCTAATATGATATTCCCCCTAGAGT
GTGTCCAGGTTAATGTGGATGAAAAGATGTTAATTTCGATAACCGTGCTTTGACGAGCCA
TCTTTACTATCGGAATGGGCGATAAAATGATTATCCTCATTCGGAAGGCTTTGTTTCTCC
ATGTCTAAAATCCCGTCTTAATGGGCGCTTAGATGAGAAACTTCGCTATCAAGGGCCTGC
TTTCGCCTTTCC
GenBank Accession BX660082 [GenBank]
Graphic View Graphic view of gene At1g30720
Predicted Position of Insertion Chr1:10899079 - go to primer design
BLAST e Value 2e-72
Hit Clone Code (BAC ID) T5I8
Hit Gene Code At1g30720 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation FAD-binding Berberine family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37