SimpleSearch - Line and FST details


Line specific information

 
Line ID 654D08
Vector Used pGABI1
Line Availability available as T3 set from NASC (N462732)
Segregation Analysis 50:32:31
Confirmed for Hit At3g57720 At1g23680
Parent of DUPLO pair none
Parent of pair(s) 9639, 97178, 97180, 97182

Gene hit At3g57720

 
Sequence (A. th genome BLAST matches underlined) 
>60-K021385-022-654-D08-8409
ATCTGAAATATCCAGCTAGCAACTATAGTTATATTCTGAACTGATGTCGCTACCTATGTG
AGACAACGATTCGTCAGTATTACTATATTGCACGTACGGCAACCCACCGCCTACAGAGCA
CACGCTTCCACATGCACTTTTTGAGCACTTGTAATGTCTTCCATCACCTTAGGATCTATT
ACTCCATCAAGCTGCCCATTCTCATGAAAGCCTTTCACGTAGCTAGCAATATGTTTGTAG
TCCCCATCAAAGCTAGTGGATGCAAGTGCTGGTTTACCAGTGAGAATAACCATCAAGAAG
ACTCCAAAGCTGTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX660449 [GenBank]
Graphic View Graphic view of gene At3g57720
Predicted Position of Insertion Chr3:21388844 - go to primer design
BLAST e Value 1e-104
Hit Clone Code (BAC ID) F15B8
Hit Gene Code At3g57720 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Protein kinase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g23680

 
Sequence (A. th genome BLAST matches underlined) 
>60-K021351-022-654-D08-8409
NNTTTCGACTTGTTCCGGACATGAGCCATTTACATTGAATATATCCTGGAGCGACTATAC
ATATATTCAAAACGTTTGTGCAAGCAAATGGAGCCGAAGAGTCAAGAAGAATACAATATT
GCAAGTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX660448 [GenBank]
Graphic View Graphic view of gene At1g23680
Predicted Position of Insertion Chr1:8377036 - go to primer design
BLAST e Value 2e-38
Hit Clone Code (BAC ID) F5O8
Hit Gene Code At1g23680 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein (DUF220)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37