SimpleSearch - Line and FST details


Line specific information

 
Line ID 664F02
Vector Used pGABI1
Line Availability available as T3 set from NASC (N463710)
Segregation Analysis 50:49:41
Confirmed for Hit At1g18890 At3g28290
Parent of DUPLO pair none
Parent of pair(s) 86361, 86362

Gene hit At1g18890

 
Sequence (A. th genome BLAST matches underlined) 
>14-K117844-0022-664-F02-8409
TTGAGATCTTTGGTCGAAACCTATTTTGAAAGTGCCAAGAAGACTTTGGACTTTGCCGAG
ACTGTAACAGAATACATCGATGAAGCGTAGAGGGGCGTAACGTTACGTTGTAGCGGCCGT
GGCACACTTTGAAAAAGACAAAGAATATGATGTTGGAAAAAAAACGAAAAGGTATCATAC
TACCTTCGAGGGAGCTGAAAAAGTTTGAATCCCTGGGACATCCTTTTGATGGCGAAAATT
TCACGACTCTCTTCTGGTTGATGCGCAAGGAGCAACAATCCCTTCTGGAAAGAATGAGGG
AGACTAAGGAAAAGCTTGATGAGGAACTTACAAATATTGCGATGGAACTCAATAGTCCAA
AGAAATGGACTATAATTTCGAATGTGCTTTTCATCGGTGCGTTTGTTGCTGTTGCCGTCG
GATCCATGGTCCTAACCTGCCCGGCCACAAAAAAAATTCAGATCTGCGACAACCACTTCT
TAGGTCGTGATTCACGACGAGGCTAATTCTGATTCACTTAGATCTGTACTGATCTCTGGA
CCCACTGAAGCTATTACCTTGCAAAATCTATTTCGAAGCAAAAGCTTCAAACAGCTGTCA
ATATCTAATACATTCATCGGGAGGTAACTTTTATATCTACTTTACCTGAGCACCTTAATT
TATTTAACCTTAA
GenBank Accession HG968092 [GenBank]
Graphic View Graphic view of gene At1g18890
Predicted Position of Insertion Chr1:6526008 - go to primer design
BLAST e Value 6e-13
Hit Clone Code (BAC ID) F6A14
Hit Gene Code At1g18890 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation calcium-dependent protein kinase 1
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit HG968092 [GenBank]

Gene hit At3g28290

 
Sequence (A. th genome BLAST matches underlined) 
>14-K024024-022-664-F02-8409
TTGAGGGAGATGAAGAAGTTTGAGGCCATGCGAAAACATTCCGACGGCGACAACTTCCCG
AATCTGTTTAAGTTGATGCTAGAGGAGTAACATACCCTTCCGGAGAGAAAGAGGAAGACC
AGGGAAAAGCTTGATGAGGAACATACAAATATTGAGATGGAGACAAGAAATCCAAAGAGA
TGGAGTAAAATTTCTAATGTGCTTTGGATAGGTGCGATAGCTGCTGTTGCCGTCAGAGCC
ATGGAACAAGTAAGCACGAGAAGCAATCAAACTCGAGTCAGCGACAAATACATCTTAGGT
CGAGAAATAGGTCGAGGCGAATTCGGAATCACTTACCGCGGTATGGGATCCTCCCTATA
GenBank Accession BX894300 [GenBank]
Graphic View Graphic view of gene At3g28290
Predicted Position of Insertion Chr3:10548173 - go to primer design
BLAST e Value 3e-28
Hit Clone Code (BAC ID) MZF16
Hit Gene Code At3g28290 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transmembrane protein, putative (DUF677)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX894300 [GenBank]


Last Updated on 10.06.2021 13:37