SimpleSearch - Line and FST details


Line specific information

 
Line ID 668B10
Vector Used pAC161
Line Availability available as T3 set from NASC (N464054)
Segregation Analysis 50:50:47
Confirmed for Hit At1g80240
Parent of DUPLO pair none
Parent of pair(s) 4786, 4948, 7410, 7420, 81212, 81222, 81224

Gene hit At3g50370

 
Sequence (A. th genome BLAST matches underlined) 
>74-K024026-022-668-B10-8409
CGCTGCAGCTTAGCAGCCGGTGGAGCTTGCTTGTTGGTTACGACTTTTAACTGAACCCGT
GAGGAGGATAATTACCATTGAGAACTGAGCCAGGTGCACCTTCCCCCCCACACGGTGAGC
GACCGGCCACCTCAGTGATCCGAATGGGACTTTTAAGCATCAGCCGACAGATGGCATTGC
GAGAAAAGCACTGGATCCGTGAGATCCGACGATGCCCCGGGCGCGCTCCCAACATTATCG
CAAAGTATTAGAACGCTCGTATGGTACCCTCCCGATAGTGAGCATCTCCAGGAATTCTCC
AACTCTGAGCAATTGAATGCTCCGGGAATCCTGGTTTGAATTACGAACCCGCACTGAGAT
ATCCAACTGTCCCACAGAATTCTTCCTGTGGGTTATGTGTAACATTCTTCAAATTTTGTG
GATTAGACCTTGTCTTGCTTCGACTATCAACATCTTCCTATCTCCAC
GenBank Accession BX894533 [GenBank]
Graphic View Graphic view of gene At3g50370
Predicted Position of Insertion Chr3:18681287 - go to primer design
BLAST e Value 4e-55
Hit Clone Code (BAC ID) F11C1
Hit Gene Code At3g50370 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At1g80240

 
Sequence (A. th genome BLAST matches underlined) 
>74-K022986-022-668-B10-8409
TTTCCCTAACATCATCGATCACCGGACCACCTATCGAGCCAGAGTGATCGCTTTTCATGT
GGTAAAACGTGCTCAAGAAAGTGACACGTGTCCTGGCCGACACTGCCTTGAACACAAGCC
TCCCACGTCTAAACCCGCCTTTTCCTTTAGAAGCGTAGTCCACCATGACCTTGCCCTGTC
CAGCGAACGCTTCCACAATCATTGGTCCCTCACAACCGTCTCTGGCGTCTCCCACGTTGA
ACGTGAGGGCGCAGAATTTGTCCAGTGACGTCCTCACTATCTGAGAAATGGCGCTCTCTT
TGCCTCCAACAAGCTCGATGGCTCGGTGTCCTTCGGCGACAGCG
GenBank Accession BX660887 [GenBank]
Graphic View Graphic view of gene At1g80240
Predicted Position of Insertion Chr1:30171550 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F18B13
Hit Gene Code At1g80240 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37