SimpleSearch - Line and FST details


Line specific information

 
Line ID 668G11
Vector Used pAC161
Line Availability available as T3 set from NASC (N464115)
Segregation Analysis 50:50:47
Confirmed for Hit At3g23760
Parent of DUPLO pair 1534
Parent of pair(s) none

Gene hit At1g24300

 
Sequence (A. th genome BLAST matches underlined) 
>87-K024026-022-668-G11-8409
ACTGATACTTAATGCAGAATGCGGGAAACGACAATCTGATGCCCGGGTATGGGCATCCTC
CCTATAGTGAGTCGAAAACCTGTCCAAAGTTTCTCCGCCAAATCTCTCCAAAACCCTTTC
TCCTATCTACTTTTTGCTTCCTCATCTACTGCGAGCGCATCGTTCGTCTCCTTCTTCATA
CGTAATCTCGAAGTCCCGTTGTTTCAATCCTGCCATGGCCGAAGGAAATTTCTATCTGCC
TGACGATCTCATCCTTTTCGAATCTTCTGATCAGATGAAACGTATGGGATCCTCCCTATA
GTGAGAAGGNATNGNAACCTCCCTATAATGAGAAACTCTCCTTTAATGGATTGCTTTTTA
AAATATA
GenBank Accession BX894550 [GenBank]
Graphic View Graphic view of gene At1g24300
Predicted Position of Insertion Chr1:8620618 - go to primer design
BLAST e Value 6e-79
Hit Clone Code (BAC ID) F3I6
Hit Gene Code At1g24300 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation GYF domain-containing protein
Insertion Classification TS2TE (5')
Confirmation Status unknown

Gene hit At3g23760

 
Sequence (A. th genome BLAST matches underlined) 
>87-K022986-022-668-G11-8409
GCGAGTTCCGGACTGAGCCATTTACATTGAATATATCCTGGCCATATATTCAACAATATA
TTGTCTACCAAGACTAGTCTCAGCAACATACTAAAACATTTCTGTTTCTGAAACCAATAA
AGAACTACAAAATCTACCGTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX660921 [GenBank]
Graphic View Graphic view of gene At3g23760
Predicted Position of Insertion Chr3:8563333 - go to primer design
BLAST e Value 3e-34
Hit Clone Code (BAC ID) MYM9
Hit Gene Code At3g23760 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transferring glycosyl group transferase
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX660921 [GenBank]


Last Updated on 10.06.2021 13:37