SimpleSearch - Line and FST details
Line specific information
| Line ID | 670F02 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N464286) |
| Segregation Analysis | 60:59:45 |
| Confirmed for Hit | At5g17040 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note | |
Gene hit At5g17030
| Sequence (A. th genome BLAST matches underlined) | >14-K022931-022-670-F02-8409 NNAGTCTGTATTCGGACATGAGCCATTTCATTGAATATATCCTGATGAGAAACAATCGCT CACTGCTCATCTCTACCAAATCGATTGTATGGGATCCTCCCTATAGTGAGAGTAGTGGAG TCTTCACGAAGGATGGATTTGAGGAGAGTTTGGATCGGGTATGGGATCCTCCCTATAGTG AG |
| GenBank Accession | BX661077 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:5603438 - go to primer design |
| BLAST e Value | 7e-20 |
| Hit Clone Code (BAC ID) | F2K13 |
| Hit Gene Code | At5g17030 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | UDP-glucosyl transferase 78D3 |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit At5g17040
| Sequence (A. th genome BLAST matches underlined) | >14-K022931-022-670-F02-8409 NNAGTCTGTATTCGGACATGAGCCATTTCATTGAATATATCCTGATGAGAAACAATCGCT CACTGCTCATCTCTACCAAATCGATTGTATGGGATCCTCCCTATAGTGAGAGTAGTGGAG TCTTCACGAAGGATGGATTTGAGGAGAGTTTGGATCGGGTATGGGATCCTCCCTATAGTG AG |
| GenBank Accession | BX661077 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:5605595 - go to primer design |
| BLAST e Value | 7e-20 |
| Hit Clone Code (BAC ID) | F2K13 |
| Hit Gene Code | At5g17040 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | UDP-Glycosyltransferase superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At2g13630
| Sequence (A. th genome BLAST matches underlined) | >14-K023074-022-670-F02-8409 ATTGAATTATCCTAGGATAATGACGATGATTATACTTACATTCTAGCATTCTCCATTTTT GTTTTGCCCGTATGGAATCCTCCCTATAGTGAGGCC |
| GenBank Accession | BX661078 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:5685034 - go to primer design |
| BLAST e Value | 1e-18 |
| Hit Clone Code (BAC ID) | T10F5 |
| Hit Gene Code | At2g13630 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | F-box associated ubiquitination effector family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 606E12 |
|
Last Updated on 10.06.2021 13:37 |
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