SimpleSearch - Line and FST details


Line specific information

 
Line ID 685C03
Vector Used pAC161
Line Availability available as T3 set from NASC (N465691)
Segregation Analysis 50:37:32
Confirmed for Hit At2g03520
Parent of DUPLO pair none
Parent of pair(s) 8163, 9717, 83037, 83040

Gene hit K18I23

 
Sequence (A. th genome BLAST matches underlined) 
>19-K024533-022-685-C03-8409
ATCAGTGTTTATTCTTTGTGTAATGTAAAAATTGTTTGGGGGAAATAGGAAGATAGCTCG
GACGGTACGTATTATTGATAATCCAGACCCGGAAATAGTCTAAGATTAGATGGAGATATA
TAATTTCACATATCGAACTTTTATTGGATATATACATGAATGAATAAGAGAGATTATGTG
AAGGTTCACACACACCTGGTTGTAAATTGATAAGATTGTGTATATATGAAGTTATAAACT
AATTGTGCAGGGAGAAAACAAATCTCTTTAAACAATGCTTTCAGATATTGGAACTCGAAA
TTTGAAGACTCCATTTTTTGGTAATGAACTATGGGATCCTCCCTATAGTGAGACGCAAAC
AAAACAGGATGCAGTCCGAGTTATTTTTTCAATTCAAAA
GenBank Accession BX943577 [GenBank]
Graphic View Graphic view of sequence BX943577 of line 685C03
Predicted Position of Insertion Chr5:1581220 - go to primer design
BLAST e Value 5e-135
Hit Clone Code (BAC ID) K18I23
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At2g03520

 
Sequence (A. th genome BLAST matches underlined) 
>19-K024529-022-685-C03-8409
ATGAAGCATTTACAATTGAATATATCCATGAACAGAGAATACTGATGTCTAATCGTCAAG
AGAAACTCGCGGAAAAGGCGAAAGCAGGGACGGCAGGATTCTATGTAGAGCTATGGGATC
CTCCCTATATTGAGTCGTATTTTTCATTAGAAAAATATGAATCTCTGAAAAAGATCAGAG
TTTTGTTATTACATTTTTAAAACATGGAACAAAGGCAAAAGAAAGAGCATCATCTTAATT
TGTCTCAGCTTTATACTCGCTATGGGATCCTCCCTATAGTGAGCATTTTTTTCACCGCGT
TAGGTCACCTATCTTTCTCTTTAATAATATTCCTTCACGACTCTATATAAATCTCAACTC
GGTTGTCCTTTGGTCTTCCAGAAGATAAGGGTTCCATCTTAAAATTGGTCGGAGATTATG
TGAAAATATACCTTCGTATACGTAAATACTGATGGTTTGAGCTAAGAATTCAGAGTATTT
CAGGTTAGATTTGATTCCTAAAATTAGACGGATCAAAAGGTCGGCATTGGAAAAGAAAGG
GATTATCTTCA
GenBank Accession BX943576 [GenBank]
Graphic View Graphic view of gene At2g03520
Predicted Position of Insertion Chr2:1070402 - go to primer design
BLAST e Value 4e-46
Hit Clone Code (BAC ID) T4M8
Hit Gene Code At2g03520 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ureide permease 4
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37