SimpleSearch - Line and FST details


Line specific information

 
Line ID 687C03
Vector Used pAC161
Line Availability available as T3 set from NASC (N465883)
Segregation Analysis 50:50:50
Confirmed for Hit At2g37130
Parent of DUPLO pair 2793
Parent of pair(s) none

Gene hit At2g16953

 
Sequence (A. th genome BLAST matches underlined) 
>19-K022967-022-687-C03-8409
NNNGGCTGTAATCCCGACATGAAGCCATTTACATTGAATATATACTGTCCTGCCTGATCT
CCCCTTGGTCTTCCCGTGATCGAATATGGTATCTATAAGACGCTCGATGCCCCAGAACAC
TGCAAATGTTAGTACTGGTATCCTTGATGGCACTTCTAATGCTTGTGAGGCCATAGGAGA
ATTAGCG
GenBank Accession BX662232 [GenBank]
Graphic View Graphic view of gene At2g16953
Predicted Position of Insertion Chr2:7361276 - go to primer design
BLAST e Value 2e-10
Hit Clone Code (BAC ID) F12A24
Hit Gene Code At2g16953 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transportin
Insertion Classification 5' region
Confirmation Status unknown
Other FSTs Supporting this Hit BX662232 [GenBank]

Gene hit At2g37130

 
Sequence (A. th genome BLAST matches underlined) 
>19-K023077-022-687-C03-8409
TCCTGATCTCCCCATTGGNTCTCCCGTTGAGCGAGGTTGGTCTCATGACAAGTAGCCTGA
CGCCACGATGAGAACTGCTCATGGAAGTAATTATTGTCCGCATGACACTTGGACACAAAC
GTCGCGGTCTATGCAGAGTCAGTACTGACTCCAACCACATGTTTATGT
GenBank Accession BX662233 [GenBank]
Graphic View Graphic view of gene At2g37130
Predicted Position of Insertion Chr2:15598245 - go to primer design
BLAST e Value 5e-15
Hit Clone Code (BAC ID) T2N18
Hit Gene Code At2g37130 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Peroxidase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37