SimpleSearch - Line and FST details
Line specific information
| Line ID | 701A10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N467210) |
| Segregation Analysis | 50:35:27 |
| Confirmed for Hit | At4g09930 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 85453, 85459 |
Gene hit At4g09930
| Sequence (A. th genome BLAST matches underlined) | >73-K025311-022-701-A10-8409 TATACATTTGGGCTGTTGACAGAGTTTCTGTTTTCTGGTTTTTGAAGATGCTTGTGAGTC AGATTTACCGATGAAGCCTTCAAGAACCCTAGGGGATCCTGCCTATACAGAGAAAGGGAA AAGTGCGACTAGGACCATGGTCCTCGAAACCGAGGCATTGTAGTCAAACGGACGAGCAGC AGGGGTTACCCATAAATGTGATGTAAATAGTACCAACCAACCAAACGGACAAATACTAAC TGTCAATGACACTCCAGGAGGGTCATTGAGTGCGATAACTTCGGGGACTAGTACAACTCG AAATCTGGTCGTCCCTGAGTGATGGTCGCTTTCTACCGCTCCCAAGCTCTATATTTCCCC TTACAACAAACAAAGCTTTGATACATATTTAGTTGGCCACAACAGAGCGAAAAGCTTTGT AATAGACTACCTCAAATTGCT |
| GenBank Accession | CR356559 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:6228697 - go to primer design |
| BLAST e Value | 5e-33 |
| Hit Clone Code (BAC ID) | F17A8 |
| Hit Gene Code | At4g09930 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Avirulence induced gene (AIG1) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g14465
| Sequence (A. th genome BLAST matches underlined) | >73-K025352-022-701-A10-8409 CATTTCTTTTTCTTATATGACTTTTATAGATTTGGGCTTTGACAGAGTTTCTGTTTTCTG TTTTTTGAAGATGCTTGTGAGTCTGATTTACCGATGAAGCCTTCAAGAACCCTATGGGAT CCTCCCTATAATGAGACATTAAATATATATAATAAACCCATGGTTTTTGAGCCAACCAAA ATGTAAAGTATCTAAAGATCACAAAGGCAAACACATACAAATATTGTAGTTAAATACTAC TACACAAAAACAAAAAGACAAACATTCTAATTTACAGTACAATGTTTATTTATTTCAATA ATTTCGTGGAGTAGTAATACTGAAAATCTGAAAGTCCCTTAATGTCGTCTCTTTCTACCT TCCCAAGCTCTATATTTCCATTAAGAACAAACAAAGCTTTGATACTTATTTATTTTTCCA ACCAGAGCAAAAGCTTTGTAATAGACTACCTCAAATTGCTTGCTTATATTCATCTATATA TTTATTTATATAGACCATTATATATAGAAATGGCTCACTGAAT |
| GenBank Accession | CR356560 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:8322305 - go to primer design |
| BLAST e Value | 8e-109 |
| Hit Clone Code (BAC ID) | FCAALL |
| Hit Gene Code | At4g14465 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | AT-hook motif nuclear-localized protein 20 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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