SimpleSearch - Line and FST details


Line specific information

 
Line ID 702E09
Vector Used pGABI1
Line Availability available as T3 set from NASC (N467353)
Segregation Analysis 50:34:33
Confirmed for Hit At1g20880
Parent of DUPLO pair 2288
Parent of pair(s) none

Gene hit At2g43630

 
Sequence (A. th genome BLAST matches underlined) 
>69-K025104-022-702-E09-8409
AGCCATTTACATTGAATAATCCTGGAGATTGGTGTAATGAGATGCATCCTGTGTTGTTGG
TACTATTTTACCTATACAAGTACGTTCTTCGGGTTCCTTAAATGCACTTTCCCTGATCGA
TCCCCCATGAAAACCCTATCTCACTTATCGGGGAACTACTCACTCTGTATTATGACATGG
AGATGAATTCGTATGGAAAGACTGTGGAGTTCCGCGGGCATGCCCACATGGCATACGCCA
TCCACCGGGTCTGAGGTTCTGTTTGCATAACTCACCCATAAGGGTAAGGGATCCTCCCTA
ACCCGCGTTTCACTATGATATTCCAATTTCTTGCAAGCTGGCTCACTGCCCTTACCTTAG
ACTCACCGAACCTGTGCCTTTATATTCTATCACGTTCGAAGCTATTGCCTTCTGGTTACT
TATCTTGCTTATTGTTCTATGACTAGTATCTTTGTATCCCGAAGATTTGTTCTTTTCTCC
CAATTTGGATTAGAAATGGATATACTCAAATTCTGAACATGCCCAGA
GenBank Accession BX944783 [GenBank]
Graphic View Graphic view of gene At2g43630
Predicted Position of Insertion Chr2:18095656 - go to primer design
BLAST e Value 2e-66
Hit Clone Code (BAC ID) F18O19
Hit Gene Code At2g43630 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation nucleusenvelope protein
Insertion Classification Promoter
Confirmation Status unknown

Gene hit At1g20880

 
Sequence (A. th genome BLAST matches underlined) 
>69-K025184-022-702-E09-8409
NNTTTCGTGCATATCCGGACATNAGCCATTTACAATTGAATATATCCTGAAGATTGATTT
AACGAGATGCAAATTGTATTGGTGGAACTATTTTACCCATACATGTACGTACTTCGGGCC
CCTTAGATGTACATTCCCTGAACGATTCCCCATGAAAAGCCTATTTCATGTATCTTGAAA
CTACTCACTGATTATTATGCATGTAGATAAATTTATATGGTAAAACCGTCGAATCCTGTC
TGCTAGCCCACATGTAATACACCATCGAGCTGGTCTGAGCTTCAAATTGCATAACTCACC
CATAAGAGTATGGGATCCTCCCTATAGTGAGTTTGACTATGACATTCCAGTTTCTTGCAA
ACTGGCTCACTGCCCTTACCTTAGATTCTCCGAACCTTTGCCTATATATTCGATCACGTT
CGAAGCTATGGCCTACCGGTTACTTCTCTTGCCGACAGGACAAAGACCTGTGTCATTGCC
TCCCGTCAATTAGTACG
GenBank Accession CR356709 [GenBank]
Graphic View Graphic view of gene At1g20880
Predicted Position of Insertion Chr1:7263630 - go to primer design
BLAST e Value 9e-10
Hit Clone Code (BAC ID) F9H16
Hit Gene Code At1g20880 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RNA-binding (RRM/RBD/RNP motifs) family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CR356709 [GenBank]


Last Updated on 10.06.2021 13:37