SimpleSearch - Line and FST details


Line specific information

 
Line ID 714G06
Vector Used pGABI1
Line Availability available as T3 set from NASC (N468526)
Segregation Analysis 50:47:44
Confirmed for Hit At2g29880
Parent of DUPLO pair 12563
Parent of pair(s) none

Gene hit F17A8

 
Sequence (A. th genome BLAST matches underlined) 
>47-K025109-022-714-G06-8409
ATTGAATAATCCTGCCCACACAATAGGCTGCCCACACCTCAGCTGGAGCTGTAAATTGTT
TTGTGATGGGATCCCCTCCCAAACCCGAACTAAACCCAAAAAGTGCCCCGTACACAGAAT
ACTCCTTTTTCCTAGACTTCATTCCACTTAAATAATTTGTGTAAGTCCTATTACATTTAA
ACTTTTTATTTAGAAGAGGTAGGATTTTTCTCTCCACCGTAGTTTTGCTTATAGAATGGG
ATCCCCCCTATAGAGAGCAGACCGAACTAAAGCTAAACTGAACATAAATTGACCCAAATC
CAAACTAAATCATACTAACTTCGGTTGAATTTAGTTAAAGTTTTATAAAACTCAAATAAA
CCGAATCGAGCTAAACCCAAACCGAATCCGAACTTAAACCGAAATACTCACATCTTAATT
GTATTATGAATATGATGATTTCTACCTTTATTATAATTAGAGAAATATAATAAATAAAAA
ATGGTGCTCGCCGGATTGGTTCTAAAAAAAACTGAAATAATTACTACTTAAGTATGGG
GenBank Accession BX945399 [GenBank]
Graphic View Graphic view of sequence BX945399 of line 714G06
Predicted Position of Insertion Chr4:6177822 - go to primer design
BLAST e Value 5e-141
Hit Clone Code (BAC ID) F17A8
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At2g29880

 
Sequence (A. th genome BLAST matches underlined) 
>47-K025038-022-714-G06-8409
ATTGAATAATCCTGCCCACACAATAGGCTGCCCACACATCATCTGGAGCTGTAAATTGTT
TTGTGATGGGATCCCATCCAAAACCAGAACTAAACCAAAAAAGTGCAGCATACACAGAAT
ACTCCTTTTTCATAGACTTCATTCGACTTAAATAATTTGTGTAAGTCTTATTACATTTAA
ACTTTTTATTTAGAAGAGGTAGTATTTTTCTCTCTACCGTAGTTTTGCTTATGGTATGGG
ATCCTCCCTATAGTGAG
GenBank Accession BX945398 [GenBank]
Graphic View Graphic view of gene At2g29880
Predicted Position of Insertion Chr2:12742890 - go to primer design
BLAST e Value 2e-118
Hit Clone Code (BAC ID) T27A16
Hit Gene Code At2g29880 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Myb/SANT-like DNA-binding domain protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37