SimpleSearch - Line and FST details
Line specific information
| Line ID | 718H06 |
| Vector Used | pGABI1 |
| Line Availability | available as T3 set from NASC (N468922) |
| Segregation Analysis | 50:47:41 |
| Confirmed for Hit | At1g53190 At1g60800 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At1g53190
| Sequence (A. th genome BLAST matches underlined) | >48-K025281-022-718-H06-8409 GNAGCCATTTACATTGAATATATCCTGTTATGATTTGAGAGAGCATCCGTTTTGCTTCTG AGCTCTGATCATGACCCTCGGTCCTGAGTAATGACTGGTTCTCCTCTTAGGAGATTTCCT CGATGTTCTTTCGCATAGATATATGATGATCAATGAGAGTAGTTCGAGATCCACCAGGGA GGTCGTCCGACTCCCTCAGGCGCAATTTCCTACACTCTTTGAAAGAGAACCTAAAGAAAC AAAACCTTGAGCAACGACCAATATGAAAGAAGATGGAGCAGAAAATTTGAGGAAAGAAAG TTACATCATCAGGCATCACTCTAAGCCGAGGAACTCCTCCACGGTGTTGTCTAAGAGTTG CTACAGGTATGGGATCCTCCCTATAGTGAGACNNTGTTACNGTCCTTGAGACGTTTGACA GCCACCAAAGTTCCATCGTTTAAGTGTCCTTTGTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | CR357290 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:19839480 - go to primer design |
| BLAST e Value | 8e-75 |
| Hit Clone Code (BAC ID) | F12M16 |
| Hit Gene Code | At1g53190 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g60800
| Sequence (A. th genome BLAST matches underlined) | >48-K025307-022-718-H06-8409 NNNTTCGTCGTATCCGGACATGAGCCTTTACATTGAATATATCCTGTTATCATCTAACAG AGTACCGGTTTCTTATATGCTCAACACATGACCGAAACCCTATAAGAACCCTAATTCCCT TATCTGGGAACTACTCACAGATTATTACTCAGAGAGATAGATTTGTAGAGAGAGACTGGT GATTTCAGCGGGCATGCCCGTATGGGATCCTCCCTATAGTGAGCAGTTTTTTTGGAAACT GCCTTACCTTTTAAGCGTGATGCGACACTCCCATTTGGCATGTAGAGGTAGACTAAAATT CGCTCCTGGTTGCTACTACAGAAACCGCCGATCCGGACCAAATAGCTCCGCCGAGCCGTT GTTATAGACTCGACTTCTGTCTGAGACTGGACTTCTCCACCCGCAATGTTACAGTCCTTG AGACGTTTGACAGCCACCAAAGTTCCATCGTTTAAGTGTCCTTCGTATGGGATCCTCCCT ATAGTGAGNNNNNNNNNNNNNN |
| GenBank Accession | CR357291 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:22384563 - go to primer design |
| BLAST e Value | 8e-75 |
| Hit Clone Code (BAC ID) | F8A5 |
| Hit Gene Code | At1g60800 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | NSP-interacting kinase 3 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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