SimpleSearch - Line and FST details


Line specific information

 
Line ID 722C11
Vector Used pGABI1
Line Availability available as T3 set from NASC (N469251)
Segregation Analysis 50:45:44
Confirmed for Hit At3g55140
Parent of DUPLO pair 12668
Parent of pair(s) none

Gene hit T20F20

 
Sequence (A. th genome BLAST matches underlined) 
>83-K025198-022-722-C11-8409
GCCATTTACACATTTTTCTTTTGCTAGGTAGAAGAGATTGCAGTTGAATACGTTTTATCG
GAAAAGTAGAACAGCCGATGAGGTAAACAGAAGCATCTCCTATAATAATCCTAACAACGT
ATTCTGAGTATTTATGGTGTTTTTGAGCATAGGGATCCTCCCTATATCTGAGAGAATCAT
AGAGACAGATAGATTTGTAGTAGAGAGACTGTGTGATTTCAGCGGTTATGCCCGTATGGG
ATCCTCCCTATATAGAGATTTCGATATAATTGGGATGAAAAAAGATGTAGGTATTACGTA
TGGGATCCTCCCTATAGTGAG
GenBank Accession CR357777 [GenBank]
Graphic View Graphic view of sequence CR357777 of line 722C11
Predicted Position of Insertion Chr3:11807876 - go to primer design
BLAST e Value 6e-14
Hit Clone Code (BAC ID) T20F20
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit CR398316 [GenBank] CR357777 [GenBank]

Gene hit At3g55140

 
Sequence (A. th genome BLAST matches underlined) 
>83-K025132-022-722-C11-8409
ATAAGAATCTTCATGTGAGATCTCATGCAATGATCTATGATCTGCAAAAGAGGTTAACTG
AGCTTCTCTTATAGTACACACAGCATATATTCCCCAGTTTCTTGAGTAGATGTCGTATGG
GATCCACCATAAGTAGAGAATCATCTAGACAGATCGATTTGTAGATATAGACTGTTGATT
TCCACGTTTATGCGTTGGAGATAAACATTCCCATTAAGGATTTCGATATAATTGGGATGA
AAAAAGATGTAGGTATTATGTATGGGATCCTCCCTATAGTGAGTNN
GenBank Accession CR357776 [GenBank]
Graphic View Graphic view of gene At3g55140
Predicted Position of Insertion Chr3:20439818 - go to primer design
BLAST e Value 1e-21
Hit Clone Code (BAC ID) T26I12
Hit Gene Code At3g55140 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Pectin lyase-like superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37