SimpleSearch - Line and FST details


Line specific information

 
Line ID 727F10
Vector Used pGABI1
Line Availability available as T3 set from NASC (N469766)
Segregation Analysis 50:47:46
Confirmed for Hit At3g12740
Parent of DUPLO pair none
Parent of pair(s) 3921, 4062, 4080, 4144, 4245, 8335, 8349

Gene hit At1g52860

 
Sequence (A. th genome BLAST matches underlined) 
>78-K025221-022-727-F10-8409
NNNNCCGCGTGATCCGGACATGAGCCTTTACATTGAATATATCCTGAGGATGATTTTGGT
GGACACCCAATTGTGCCCTGTGGACTACTTGCCTTGGAGTCTCTTTAATGACCCCTACCG
TTCGATCCTGAAGTAACCAGGGTTTAACGGTGAACTTTAAAGGAATTGCATGGAATAGCG
ACCACGATCACATGTTTGGCAAAAATGTGTTTCCCAAGAACTTTCCCAAGGGCAATCTCA
CTGGCGCTGCCACTCCAGATCCTAATAATCCGGTATCCGTTTACTACCACAGTATGGGAT
CCTCCCTATATTGAGTTTATCACATATATTGATTTAAGGATATTATATTATTTAAAATCT
TATGGTCATAAATATTTTCAGCATTTGCACAACAAAAAATAATTATTATTATTATTGAGA
AGAATCTTGTAAGAGTATGGGATCCTCCCTATAGTGAGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNN
GenBank Accession CR358466 [GenBank]
Graphic View Graphic view of gene At1g52860
Predicted Position of Insertion Chr1:19685140 - go to primer design
BLAST e Value 7e-63
Hit Clone Code (BAC ID) F14G24
Hit Gene Code At1g52860 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation tRNA-Tyr (anticodon: GTA)
Insertion Classification TS2TE
Confirmation Status unknown

Gene hit At3g12740

 
Sequence (A. th genome BLAST matches underlined) 
>78-K025112-022-727-F10-8409
TTTACATTGAATAATCCTGAGGATGATTTTGGTGGGCAGCCACTTGTGCCATGTGGTCTA
ATTGCTTGGAGTCTCTTTAATGACACATACGTTCTATCAAGAAATAACCAGGGTTTAACG
GTAAACAAGAAAGGAATTGCATGGAAGAGCGACAAGGAACACAAGTTTGGGAAAAATGTG
TTTCCCAAGAACTTTCAGAAGGGCAATCTCACTGGTGGTGCCAGTCTAGATCCAAATAAA
CCAGTAAGCGTTTAATACCACGGTATGGGATCCTCCCTATAGTGAGATTATCACATATAT
TGATTTAAGGATATTATATTATTTAAAATCTTATGGTCATAAATATTTTCAGCATTTGCA
CAACAAAAAATAATTATTATTATTATTGAGAAGAATCTTGTAAGGGTATGGGATCCTCCC
TATAGTGAGACCATATACAATCTCTCT
GenBank Accession BX945587 [GenBank]
Graphic View Graphic view of gene At3g12740
Predicted Position of Insertion Chr3:4050810 - go to primer design
BLAST e Value 2e-134
Hit Clone Code (BAC ID) MBK21
Hit Gene Code At3g12740 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ALA-interacting subunit 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37