SimpleSearch - Line and FST details


Line specific information

 
Line ID 729H06
Vector Used pGABI1
Line Availability available as T3 set from NASC (N469978)
Segregation Analysis 50:49:47
Confirmed for Hit At5g26050
Parent of DUPLO pair none
Parent of pair(s) 3097, 3306

Gene hit At3g13870

 
Sequence (A. th genome BLAST matches underlined) 
>48-K025114-022-729-H06-8409
ATTGAATCAGAATCATGACTGAATATTGTATGAAATCTGGATAGATATTTGTTTAATCAC
AAACCTCTGTAATAGAGAGGAGGTTATCTGACCATGGAATGATGAATAGACTAGTAGAAT
GGTGACACCTATTCTTCATGCTCATCATCACGTCATCCTCCTCTTACTTTGACTTGGTTG
CAACAATACCTTGAGCAAAATTCTCGACACCAGCAATCTTTTTACTTAGTGCTTCTTCAC
CCATTTCGGAAGCTGATAATGCGTTGGACAGAGCATACACAGCCGATTCCCCTTCCAGTC
TAAATACCATTCCTATTGCTGTTCATGTTTCATGATTAGCCCGTTCTATTAGATCTTCCA
TCGGTCCAGATAAGGCTACTTTTAGTTTTGACTGCAATGAATGTTATCTATTAGAAATGT
CCACATATGAATTTACGCCTGTTTGATG
GenBank Accession FR815087 [GenBank]
Graphic View Graphic view of gene At3g13870
Predicted Position of Insertion Chr3:4567075 - go to primer design
BLAST e Value 6e-79
Hit Clone Code (BAC ID) MCP4
Hit Gene Code At3g13870 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Root hair defective 3 GTP-binding protein (RHD3)
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At5g26050

 
Sequence (A. th genome BLAST matches underlined) 
>48-K025222-022-729-H06-8409
NNNTTTGTGGATATCCGGACAGNAGCCATTTACAATTGAATATATGTATAAGCCCTCTAT
CTTCGATACACAAAAGTATTCGATCCCCTCCCAACGCGCATTGTTTTCGAAACCCGATCC
TTGACATAAAACACAGTCACGACGTCTTCTTTCGTGGTTCCTAAACCGCTACTAGACTGG
CAACGGAACTCGGTTTTAAGAAAGGGCCACATGATCATTGTCTGGAACTTCCATATCCGC
GATTGCTTCCGCTTTATCATATTCCACCCGAGGTCATCCTCGTTTGACCATGACCGGACG
GCTAGCTTCGCTTTAGGGACACTATCGACCCCCGAGATTTCTTTCTTTAGCGCTACTCCA
CCCGCTATGGTTGGTGAGGATGACATCAACACTGCTAACAAAACCGTCTCCCCTAACAAG
CACCATCCGAGGTCTCTTCCCGTTTCTATCACATGATCACACTGTTTTCTTAGATCTTGA
TTTCGTCCAGACTTGGTGCTTATTCGTAATACCGATATAGAATGTGCATTATCTGACATG
TACACA
GenBank Accession CR358619 [GenBank]
Graphic View Graphic view of gene At5g26050
Predicted Position of Insertion Chr5:9103494 - go to primer design
BLAST e Value 3e-133
Hit Clone Code (BAC ID) T1N24
Hit Gene Code At5g26050 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Plant self-incompatibility protein S1 family
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37