SimpleSearch - Line and FST details


Line specific information

 
Line ID 748E05
Vector Used pGABI1
Line Availability available as T3 set from NASC (N471765)
Segregation Analysis 50:47:47
Confirmed for Hit At5g16450
Parent of DUPLO pair none
Parent of pair(s) 2889, 6982

Gene hit At3g55940

 
Sequence (A. th genome BLAST matches underlined) 
>37-K023868-022-748-E05-8409
ATTGAATATGATGAATAACAATAAATATATACTGAATATTTTGTTTGTATAGAAAATAAT
AATTCGTCAAAATATCACTGAGAGTCAGAGTAGTGTAGTTCACGTCGTTCGCCCATTGGG
GTATGGGATCCTCCCTATAGTGAGGCGAAATGAGGAAAAACCCCCCGGGGAAAAAGGGGG
CAAAAACCCGAAGGGAAACCCGTTTCCGGCCCCCCCCAGTTTTAAGGAAAAGCCCCAAAA
AAAAACAACCCCCCCAAGAAAAAAAAAAAAAAAAAATTTCCGGGCCGAACAAAAAAAAAA
AACCCAAAAATTTGGAAAAAAAATTTCCTCCTCCTCCTCAAACCAAAAATTAACCTTGGG
GAATTGGTCCAAGGGCAAAACAAAAAAAAAAAGGTCGTTTTGGTTTCCCGCCAGAGGAGG
GGACCCCC
GenBank Accession BX895849 [GenBank]
Graphic View Graphic view of gene At3g55940
Predicted Position of Insertion Chr3:20747371 - go to primer design
BLAST e Value 1e-55
Hit Clone Code (BAC ID) F27K19
Hit Gene Code At3g55940 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Phosphoinositide-specific phospholipase C family protein
Insertion Classification Promoter
Confirmation Status unknown
Other FSTs Supporting this Hit BX895847 [GenBank]

Gene hit At5g16450

 
Sequence (A. th genome BLAST matches underlined) 
>37-K023556-022-748-E05-8409
ATATCCGGACATGAGCCTTTACATTGAAATGAAGAATAACCTAGATATATACTGAATATT
TTGGTTGTATAGAAAATATTAATTCCTCAGAATATCACTGATAGTCCGAGTACTGTAATT
CACGTCATTCGGCCATTGGAGTATGAGATCCTCCCTATACTGAGATAAATCTGGAAAATG
GGTTGCAAAGCTCGTAGCTGACCACTCCGAATCAGCTCTTGATTCGCGTCACAAACTTCC
GCAGTTGTCACAAACGCCATTTTCTTCTTTTTCCTGTTCTCAGCTATGATCAAAACATGA
GACTTGCGACTGAATCAATCAAAAGTAATCTGAGATCATGATGATATGATATGATCAAAC
ACATAATGAAAATAATCAGATTTTCAGATTTTCGATATAGCTTGAGTATGATCACCGAAT
CTGTTTTCTATTTCATGGAGAATCAAACTAACCCAGAAGAAAAAGGACAAAACTTTTGAA
AATATTTCTATGGAAAGGATCATATCAAGTTTTGTTACCTGCATCATACCATATTCAAAT
GTATGAAAAAC
GenBank Accession BX895848 [GenBank]
Graphic View Graphic view of gene At5g16450
Predicted Position of Insertion Chr5:5374567 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MQK4
Hit Gene Code At5g16450 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37