SimpleSearch - Line and FST details
Line specific information
| Line ID | 769C10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N473762) |
| Segregation Analysis | 50:48:44 |
| Confirmed for Hit | At5g54840 |
| Parent of DUPLO pair | 1192 |
| Parent of pair(s) | none |
Gene hit At5g54840
| Sequence (A. th genome BLAST matches underlined) | >75-K024642-022-769-C10-8409 ATTGAATATATCCTGAAAAACTGAGGTAAATAACTTTTACAGGCTGAAAGTGGAGACAGC TATGGGATCCTCCCTATAGTGAGTTCTATTATTCCACCCGTTGACTATGTTTTGTTCCCT ATAGTGAGACTTTGTATTTGTATTTATTGGATGATTTTGTTTTATAATTTTCTGTTGTCA TTAGGATTTTATAAATTCTGATTTACTATGGGATCCTCCTTATAGTGATTGTTACGATTC AACCAATTTTTCATTGCAGGATCTTCTCTCAGTTTATACTTTTCATGCAATTTAATCATA CCACGTTACCAATTACGACCTTTTTCTTATTTTATGGTATCCTGACGAAATAGGCATTAA AGATGTATTATGATAATTATATTTTTTGGGAAAATCTTATTTTATAATCATTCAGATTTA TGTAGACTATTATATTTCTAAAGGTGAGTCGGGTTTTAATCTTTTTTTCATAATTATTCA TATGACGAACAGATTAATATAATCTTATATTACTTAG |
| GenBank Accession | BX946645 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:22277177 - go to primer design |
| BLAST e Value | 4e-09 |
| Hit Clone Code (BAC ID) | MBG8 |
| Hit Gene Code | At5g54840 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ras-related small GTP-binding family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit MGN6
| Sequence (A. th genome BLAST matches underlined) | >75-K024647-022-769-C10-8409 TTTTTTGGAGATATTCCGAAGAAGCCATTTACAATTGAATATATCCTGAAAATGTTAGTT AAAGATTTTTTATAGTCTTAAACTGGATACAGCTATGGATATCCTCCCTATCATTATTTT TATTATGCTAACATCTGATATATTTCTTGGACAATACGTCAAAAATTATATATATAACAC GTGAATGTGAAAGTGAAAACATAAACACATGAGATCACGACCTTATAAACACAATCAGAC TATGGGATCCTCCCTATAGTGAGACGAATTACTCCCCGCCATATTGAGAATTGGAAACCC GATGCACTTCTACCAATCGGAAAACATAAACAAACCACGTTACCCGTTAAAACCCTTTTT ATATTTTACG |
| GenBank Accession | BX946646 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:21847166 - go to primer design |
| BLAST e Value | 2e-57 |
| Hit Clone Code (BAC ID) | MGN6 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At4g25350
| Sequence (A. th genome BLAST matches underlined) | >75-K024642-022-769-C10-8409 ATTGAATATATCCTGAAAAACTGAGGTAAATAACTTTTACAGGCTGAAAGTGGAGACAGC TATGGGATCCTCCCTATAGTGAGTTCTATTATTCCACCCGTTGACTATGTTTTGTTCCCT ATAGTGAGACTTTGTATTTGTATTTATTGGATGATTTTGTTTTATAATTTTCTGTTGTCA TTAGGATTTTATAAATTCTGATTTACTATGGGATCCTCCTTATAGTGATTGTTACGATTC AACCAATTTTTCATTGCAGGATCTTCTCTCAGTTTATACTTTTCATGCAATTTAATCATA CCACGTTACCAATTACGACCTTTTTCTTATTTTATGGTATCCTGACGAAATAGGCATTAA AGATGTATTATGATAATTATATTTTTTGGGAAAATCTTATTTTATAATCATTCAGATTTA TGTAGACTATTATATTTCTAAAGGTGAGTCGGGTTTTAATCTTTTTTTCATAATTATTCA TATGACGAACAGATTAATATAATCTTATATTACTTAG |
| GenBank Accession | BX946645 [GenBank] |
| Graphic View |
|
| Predicted Position of Insertion | Chr4:12966105 - go to primer design |
| BLAST e Value | 2e-13 |
| Hit Clone Code (BAC ID) | T30C3 |
| Hit Gene Code | At4g25350 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | EXS (ERD1/XPR1/SYG1) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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