SimpleSearch - Line and FST details


Line specific information

 
Line ID 771C01
Vector Used pAC161
Line Availability available as T3 set from NASC (N473945)
Segregation Analysis 50:49:48
Confirmed for Hit At4g05520
Parent of DUPLO pair 12827
Parent of pair(s) none

Gene hit K24A2

 
Sequence (A. th genome BLAST matches underlined) 
>03-K024644-022-771-C01-8409
GNAGCCATTTACAATTGAATATATCCTGAATATTCGGCCTCCGTATCAAACATCCCTTCC
AAATCTCGTTATTCTGCTACGAATATTATTGAAAATATTCGGGATTTGAAAGTTGTAATA
CACGTTATTGTTTCTTTTGATACACTACCATTGCCTACCTTTCCGTCCCATGCTTTCTTG
GATACGTCCCTTATTTCAGCTATGTTAACCTCCCTTTAGAGCGTATTTGGTTCCAAAGAT
TCACTTTTAAAAAGAAAAAAAAATCTTCAACAATGACCATCTATGGGATCCTCCCTATAG
TGAGANNNNTNANTNNNNNNNNNNNN
GenBank Accession BX946756 [GenBank]
Graphic View Graphic view of sequence BX946756 of line 771C01
Predicted Position of Insertion Chr3:10376609 - go to primer design
BLAST e Value 6e-05
Hit Clone Code (BAC ID) K24A2
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit BX946757 [GenBank]

Gene hit At4g05520

 
Sequence (A. th genome BLAST matches underlined) 
>03-K024644-022-771-C01-8409
GNAGCCATTTACAATTGAATATATCCTGAATATTCGGCCTCCGTATCAAACATCCCTTCC
AAATCTCGTTATTCTGCTACGAATATTATTGAAAATATTCGGGATTTGAAAGTTGTAATA
CACGTTATTGTTTCTTTTGATACACTACCATTGCCTACCTTTCCGTCCCATGCTTTCTTG
GATACGTCCCTTATTTCAGCTATGTTAACCTCCCTTTAGAGCGTATTTGGTTCCAAAGAT
TCACTTTTAAAAAGAAAAAAAAATCTTCAACAATGACCATCTATGGGATCCTCCCTATAG
TGAGANNNNTNANTNNNNNNNNNNNN
GenBank Accession BX946756 [GenBank]
Graphic View Graphic view of gene At4g05520
Predicted Position of Insertion Chr4:2807253 - go to primer design
BLAST e Value 0.004
Hit Clone Code (BAC ID) T1J24
Hit Gene Code At4g05520 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation EPS15 homology domain 2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX946756 [GenBank]


Last Updated on 10.06.2021 13:37