SimpleSearch - Line and FST details


Line specific information

 
Line ID 773C06
Vector Used pAC161
Line Availability available as T3 set from NASC (N474142)
Segregation Analysis 60:48:47
Confirmed for Hit At1g54510
Parent of DUPLO pair none
Parent of pair(s) 1981, 3026

Gene hit At1g54510

 
Sequence (A. th genome BLAST matches underlined) 
>43-K024645-022-773-C06-8409
CTCACTTCAGTTCACGATTTCTATGGGATCCTCCCTATAATGAGACGTATATGTAGCAGG
TGGTGAATAGGTTTATCAGATCGTCCATTTGTATGGACCCGCCATCCTGAGGGTTCCCCT
CTAGAGTGCTTCACCTTACTTACGGTTGTAACTTCTGATCTAACATTCTATCTTCAGAAA
ATAAGACTAAGAATTAGCATTCCAAAAAGGTCTTCTAGATCGTGTGTAACACCTTTTTAA
ACTTGCCTCTAGTGAAGCGTGCCTTTGCTTTTTGCATACTATGGGATCCCCCCTATATTT
GAGCCCCATTAGTCTTTGTATTCCACGAAAAAGGAATGACGCATTTTCGAAATAAACTCC
ATCTACTCGAAAAAATGAACCTAGTATCCAACCAAAGAAAAAAGCTTGT
GenBank Accession BX947013 [GenBank]
Graphic View Graphic view of gene At1g54510
Predicted Position of Insertion Chr1:20361345 - go to primer design
BLAST e Value 3e-19
Hit Clone Code (BAC ID) F20D21
Hit Gene Code At1g54510 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation NIMA-related serine/threonine kinase 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g01010

 
Sequence (A. th genome BLAST matches underlined) 
>43-K024650-022-773-C06-8409
AGTTATCGACCTATTTTGTGCCTTTTTCTTTCTAAACTGTGCAAGTGGCTTGTTCAACTC
CTGATGGGCCTTGAGTACTTACATTCTAACCATATTCTTCATCGTGATGTCCAGGTATCA
ATCATGTTGCTCACTATGGGATCCTCCCTATAGTGAGCTAATCAAAACCGAATAAAGCTG
AAAATTAACACAAAAATAATGAATTCGAGATAATGTCTAACACTTTATTAGATTTGTCTC
TAATAACGCATGCCTTTGCAATTTGCATACTATGGGATCCTCCCTATAGTGAGTCGTATT
ACTCACGGGATTACACTGAATTGGTAACTCAATGGGTAACTCTCAATTGGGAGCCAAAGA
GAATTGTCCCTATGGGGGAATCATAGAAATCGGGTTATGAAGAGAACTTTTTTATTGAGA
AATTTTGCGAATTTTTGGGAAAA
GenBank Accession BX950228 [GenBank]
Graphic View Graphic view of gene At5g01010
Predicted Position of Insertion Chr5:2887 - go to primer design
BLAST e Value 4e-58
Hit Clone Code (BAC ID) TOPTELOMERE
Hit Gene Code At5g01010 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation retinal-binding protein
Insertion Classification CDSi
Confirmation Status unknown


Last Updated on 10.06.2021 13:37