SimpleSearch - Line and FST details


Line specific information

 
Line ID 774A01
Vector Used pGABI1
Line Availability available as T3 set from NASC (N474209)
Segregation Analysis 50:41:41
Confirmed for Hit At3g04943
Parent of DUPLO pair none
Parent of pair(s) 96680, 96683, 96685

Gene hit F11C1

 
Sequence (A. th genome BLAST matches underlined) 
>01-K025641-022-774-A01-8409
CCATTTACAATTTATATTATTTTGTATGCCGATGGTTAAGAGATGATATTAATGCGTTGA
GAAAGAACAAATGTGATATTAATGCGTGGAGAAGAACAAATGTGAACGTATGGGATCCTC
CCTATAGTGAG
GenBank Accession CR398421 [GenBank]
Graphic View Graphic view of sequence CR398421 of line 774A01
Predicted Position of Insertion Chr3:18620080 - go to primer design
BLAST e Value 6e-48
Hit Clone Code (BAC ID) F11C1
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At3g04943

 
Sequence (A. th genome BLAST matches underlined) 
>01-K025602-022-774-A01-8409
NTTTCAGTATCCGGACATNAGCCATTTACAATTGAAATACTTGGGATGGCGATATTATAT
AGAAGACATTATCGTGATAAGAAAAACAAAATGGTGTATTAATTCATGGATTTGAGAAGG
AGACAAGAAATGCAATCATAACTGCATGGCTGACTACAAAGGCAATGGAACATGTTATTA
CCCATCTCCTCCTTCAAAACAACATCCTGAGTTCTTTTATCCTACATGCTGGTGTGGGTT
TGATTGTTAAGCTCGATCTCTATCTCCAAAAGACCAAAACTATTGTTATCTTTAATCCAT
TGAATCTATTAATGATCAAGACATAATTAACTAAATCATTTCCCTTCTTTTTCTTTTATC
ATTTACTATTTTTTATACATATAAGATTTTATTATAGGAGTTAAGACGATGAAGAAGGAA
TATTAGAGATGGAATCACAAATTCTTTGGTTGCTAAGCAATGTTTTTTCTAAGCAACTTA
TAAGTCTAGTTAAGGTGCAGTATCACAAGTGTTCAATGACTTGC
GenBank Accession CR398420 [GenBank]
Graphic View Graphic view of gene At3g04943
Predicted Position of Insertion Chr3:1368445 - go to primer design
BLAST e Value 1e-119
Hit Clone Code (BAC ID) T9J14
Hit Gene Code At3g04943 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation low-molecular-weight cysteine-rich 41
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37