SimpleSearch - Line and FST details


Line specific information

 
Line ID 779D08
Vector Used pAC161
Line Availability available as T3 set from NASC (N474732)
Segregation Analysis 50:44:41
Confirmed for Hit At1g61030
Parent of DUPLO pair 12854
Parent of pair(s) none

Gene hit At1g04960

 
Sequence (A. th genome BLAST matches underlined) 
>60-K024867-022-779-D08-8409
TTCGGAATGAAATTCATTGTAAGTGAAAGTACTCGTTTCATCTTTGGTGTCTGCGGATCC
TTTATTGGTGAGAAAGATTGAACATATCAGAAGGATCATGTCTTGTTCACTATCTTGTAA
CCCTTCTGGATTGGTAATCGGAACACTATGGGATCCTCCCTATAGTGAGCATCAATACAA
GAAAGTGAGAAATAAAACGGGTTCCTTACATCACTTAAGATCATTTTAGATGTCTCATTC
TGCTCTTCCACCTTCCAATCCAAGGTCGCTAGCTTCTGAGAAAGATGTTTCCTTGTTGAC
TGCGTAAACAAATGCACTATGGGATCCTCCCTATAGTGAGACNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGANNC
CAATGGATCCTCCCTATTGGTGGGAGATAATGCGACAGTATACCCTCATATACATAAATA
CTGACATTTTGAGCTACCAATTCAAAGTAACCCATTAAAAGAAGAA
GenBank Accession BX947364 [GenBank]
Graphic View Graphic view of gene At1g04960
Predicted Position of Insertion Chr1:1409189 - go to primer design
BLAST e Value 4e-80
Hit Clone Code (BAC ID) F13M7
Hit Gene Code At1g04960 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation golgin family A protein (DUF1664)
Insertion Classification CDSi
Confirmation Status unknown
Other FSTs Supporting this Hit BX947364 [GenBank]

Gene hit At1g61030

 
Sequence (A. th genome BLAST matches underlined) 
>60-K024926-022-779-D08-8409
TATCGGACATGAAATTCATTGTAAGTGAAGTACTCGTTTCATCTTTGGTGTCTGCGGATC
CTTTATTGGTGAGAAAGATTGAACATAAAAGAGGGATCATGTCTTGTTCACTATCTTGTA
ACCCTTCTGGATTGGTAATCGGAACACTATGGGATCCTCCCTATAGTGAGACNNNNNNCN
CNNNNNNNNNNNNNNNNNNNNN
GenBank Accession BX947365 [GenBank]
Graphic View Graphic view of gene At1g61030
Predicted Position of Insertion Chr1:22481535 - go to primer design
BLAST e Value 8e-63
Hit Clone Code (BAC ID) T7P1
Hit Gene Code At1g61030 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation WAPL (Wings apart-like protein regulation of heterochromatin) protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37