SimpleSearch - Line and FST details


Line specific information

 
Line ID 779F09
Vector Used pAC161
Line Availability available as T3 set from NASC (N474757)
Segregation Analysis 50:47:45
Confirmed for Hit At1g64760
Parent of DUPLO pair none
Parent of pair(s) 79027, 79032, 79035, 79039, 79041, 79045, 79047, 79049, 79051

Gene hit At1g64760

 
Sequence (A. th genome BLAST matches underlined) 
>70-K024926-022-779-F09-8409
GNAGCCATTTACAATTGAATATTGGAGACCCATCACGATAGGAAGATAGACACACTCATG
CTGCATATTGACACCACCATCTAAGTTATAACGAGTGACATTCTTACGAACCCAATCTTT
GGCTCGGTCGTAACTATGGGATCCTCCCTATATATGAGATGCGAAAATTAACTATCAAAT
AAAAGCCAATCTTATTCAAAAGAATATGCTCTTATTCCATGGCCTATGGGATCCTCCCTA
TAGTGAGATTTTTGTTTCCTTGAAGTCTAACGTAATTTCTTACACAACTAAACAACATAA
CTCATCTACCATAGGTAACACTCAAAAGAATCATTTGAAAAAATAGATATTCAAGGTTTG
ATATAAAAAAGAAGTGCAACTGAAAAAATACAAGAAAAACTATAAAATGTAATATCTCCT
GCATATAAAAGAAAAAGTGAAAAGTACATAATCTAGTATACTGTAAAGTATACAATAAAT
AATTCTTCTAAAATAAAAATAGAAAAGGAGTCAAAC
GenBank Accession BX947418 [GenBank]
Graphic View Graphic view of gene At1g64760
Predicted Position of Insertion Chr1:24055833 - go to primer design
BLAST e Value 1e-30
Hit Clone Code (BAC ID) F13O11
Hit Gene Code At1g64760 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation O-Glycosyl hydrolases family 17 protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g26100

 
Sequence (A. th genome BLAST matches underlined) 
>70-K024867-022-779-F09-8409
ACATTTTGGCACCCCTTTTGTGATTTACATTTATGAATACCTCAATAAATCATGGAGTTG
GAACTTATTTACAATGGCTACCACTGCCCATATTCTGTGCTGAAATTAACTATCTTATGT
TAGCCCCTCTTATTCACAAGAATTATGCTCTTATTCCATGGCCTATGGGATCCTCCCTAT
ACTGGGGTTTTTGTTTCCTTGATGTCAAACGTAGTTTCTTACCAACCAAACCACATAAGT
CAGCTATCTAAGGGACCCTCAATAGAGTGTTTCCCGTTACTCA
GenBank Accession BX947417 [GenBank]
Graphic View Graphic view of gene At3g26100
Predicted Position of Insertion Chr3:9540449 - go to primer design
BLAST e Value 2e-26
Hit Clone Code (BAC ID) MPE11
Hit Gene Code At3g26100 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Regulator of chromosome condensation (RCC1) family protein
Insertion Classification TS2TE (3')
Confirmation Status unknown
Other FSTs Supporting this Hit BX947417 [GenBank]


Last Updated on 10.06.2021 13:37