SimpleSearch - Line and FST details


Line specific information

 
Line ID 785A01
Vector Used pAC161
Line Availability available as T3 set from NASC (N475265)
Segregation Analysis 50:49:47
Confirmed for Hit At1g78100
Parent of DUPLO pair 12449
Parent of pair(s) none

Gene hit F10M10

 
Sequence (A. th genome BLAST matches underlined) 
>01-K024972-022-785-A01-8409
AGCCATTTAAATTGAATATTGACATCCAACCTACCAGCCTGAATTTATCTCTTAACCACT
TTGAATAACTCATTTCTGATTAGAGTTTTTTTTGTTTGTTTGTTGGAAAGCTGACTATGG
GATCCTCCCTATAGTGAGATCGATTAATCCTGGGGATACACGGTTCTTGACTCTAGATGG
ATTCTCCTATCGCGATGGGATCCTCCCGATAGGGAGTGGCATGATTCTTAGGTCTACTGA
GATTGCGGGATGATTGTGTTTTATCTTTGCTTCGGTTAGGATTATTTTGTATCTTATAAT
GTAACTTGTTCAAATTTTCTTGCTTTTAGTTGTTAGTATTATAATAACATCATATAGTAT
TCATATATCTTTTGATTATCATTCCATTCACTTATTCTTAAAATTTTTGTTATTATTAAT
ATTAATTATTTATGGACTAAATGCTAAATCACTTTTTTATCTTATTAGTTTATCCACTCT
GACTTATCTTGTATACTTTAGAGATGTCTTTATTTCTTATTTACCCTTTCATAATATAGT
ATCT
GenBank Accession BX947795 [GenBank]
Graphic View Graphic view of sequence BX947795 of line 785A01
Predicted Position of Insertion Chr4:16449042 - go to primer design
BLAST e Value 7e-23
Hit Clone Code (BAC ID) F10M10
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g78100

 
Sequence (A. th genome BLAST matches underlined) 
>01-K024929-022-785-A01-8409
GNAGCCATTTACAATTGAATATAGCCTGCTGGTCATCGACATTGTGAATTGTAGTTCTGT
GACGTCTTGACATTTCTACTATGGTACGATAGTTTTCTTTTGGATGCTTGTCGGTAGCCA
GTCAATCTGAGTCGCTCCTTCTCGAACTCGATCAGATCCTCGGAGCCACCGAATCTGACT
CCGAGATCGATTCTCCTATCGCTATGGGATCCTCCCTATAGTGAGACGTATTACTCACGG
GGTTAGGGGGAATTGGTAACTCAGTGGGTTAGGCGTTATGGGGAGTCGGGGGGTTTGTGG
CTTATGGGGATATGGGGGTTATAGGGAAAAGGGGGGAAGGGGGTGGGGGAAGAATGGGGT
GAAAGGGGAGGAGCCGAGAGGGGGCCCGAGGGTGGAGTGGAAGGAGGGGCCGCCTTATGA
TAAGTTGGTTTGAAAGAATGTGTGA
GenBank Accession BX947794 [GenBank]
Graphic View Graphic view of gene At1g78100
Predicted Position of Insertion Chr1:29387941 - go to primer design
BLAST e Value 1e-36
Hit Clone Code (BAC ID) T11I11
Hit Gene Code At1g78100 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation F-box family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX947794 [GenBank]


Last Updated on 10.06.2021 13:37