SimpleSearch - Line and FST details


Line specific information

 
Line ID 785F02
Vector Used pAC161
Line Availability available as T3 set from NASC (N475326)
Segregation Analysis 50:48:36
Confirmed for Hit At2g20100
Parent of DUPLO pair 12383
Parent of pair(s) none

Gene hit At2g20100

 
Sequence (A. th genome BLAST matches underlined) 
>14-K024869-022-785-F02-8409
CAATAATTAGATGACATTACCAACTTTCCTTTTCAGTCCTCTATTAAACCTATGGGATCC
TCCCTATAGTGAGTCGTATTACTCATGGGGCTACACAGAATTGGTGACTCAATGGGTTAT
TCCCAATAGGGAGCTCTATGGTTTTTGGGTTATAGGGAGGAGGGGGTTATAGTGGGAAAG
GTGAAATGATGAAATTTTTTGGATATTACGAAATAGGGGAAAATTTAAATTGGTAAATTA
TTTTAAATAGATATTATGGTGAAAGTGTAGAAACAATAAAATAATGATATAAG
GenBank Accession BX947896 [GenBank]
Graphic View Graphic view of gene At2g20100
Predicted Position of Insertion Chr2:8681015 - go to primer design
BLAST e Value 3e-16
Hit Clone Code (BAC ID) T2G17
Hit Gene Code At2g20100 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX947896 [GenBank]

Gene hit At5g08680

 
Sequence (A. th genome BLAST matches underlined) 
>14-K024929-022-785-F02-8409
TTTCCTTTTCAGTCCTCTATTAACCTATGGGACCTCCATATGGGCTATCCAGGGGGCGAG
TATGGGCCAAGGTTTGGATTGGAGCTAGGTTTGGGATGGGGGGGGGGGGGAATGGGGAGG
AAATGTGATTGGGAAGCGGATGGGATTAGGATAAGAGATAGGGATTAGGTTGAGAGGAAT
ATGATGTTGAGGGAAATTGCAGTTCGATATGTGTGATAAAAGGGAGAAGATGGCTTGTGT
TAATATTTAATATAGTGGTTGGTGAGAGGAAGGTGTTGATTATAATAGATTGACTTAATC
TTATATGTCAGAAAGGTGAAGATTAATCCAAATAAATAGAAAATG
GenBank Accession BX947897 [GenBank]
Graphic View Graphic view of gene At5g08680
Predicted Position of Insertion Chr5:2823702 - go to primer design
BLAST e Value 2e-04
Hit Clone Code (BAC ID) T2K12
Hit Gene Code At5g08680 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ATP synthase alpha/beta family protein
Insertion Classification CDSi
Confirmation Status unknown


Last Updated on 10.06.2021 13:37