SimpleSearch - Line and FST details


Line specific information

 
Line ID 787E04
Vector Used pAC161
Line Availability available as T3 set from NASC (N475508)
Segregation Analysis 50:49:37
Confirmed for Hit At3g45810
Parent of DUPLO pair none
Parent of pair(s) 5575, 5706

Gene hit At3g45810

 
Sequence (A. th genome BLAST matches underlined) 
>29-K024931-022-787-E04-8409
TCAATGGCACAATCAATATCAATAATCCTGATAGAACTCGTTCCTGTGTGGGGGCATGTT
CACTACGTGATATCAGAGACTAGCCTTCTTGATTTAAGCTTAGCTATGGAACCCTCCCTA
ATGTGAAACGAACGACACTCTCGGGTCCCCGAGCACGAGGAAAAGTGGAAACCTGGGGCC
TCCACTCCCTGTGTCCCAAGTAAAAAGACCGGGGCCACAAAGAGTCGAGAGGACTACATC
TATGGGATCCTCCCTATAGTGAGNCNNNTTNNTCNNNNN
GenBank Accession BX948124 [GenBank]
Graphic View Graphic view of gene At3g45810
Predicted Position of Insertion Chr3:16837495 - go to primer design
BLAST e Value 1e-49
Hit Clone Code (BAC ID) F16L2
Hit Gene Code At3g45810 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ferric reductase-like transmembrane component family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g61370

 
Sequence (A. th genome BLAST matches underlined) 
>29-K024947-022-787-E04-8409
CATTTACAATTGAATATATCCTGGAAACAACCCGATGCGGAATATGTGAATGTGACGAGA
AGTGTAGTTAATGAAAATTGAGCTCGTTTCATGTGTGTGCTTGTTCTCTCCTTGATATCA
GAGAATAGCTTCTTGTTTTAGGCTTAACTATGGGATCCTCCCTATAGTGAGTCCTATTAC
TCGTCGCGTTACCCAGACTTGGTGACGGGGGGGGTAAGGCTGTATGGACATTTCGTAAAA
TAATACAGTTAACCGATAATATTAAAGTTCATAATAATAGAACTATGTACTGAGGATAAC
AGTGATGAAATGACTATAAGGGACACTACAACTTC
GenBank Accession BX948125 [GenBank]
Graphic View Graphic view of gene At3g61370
Predicted Position of Insertion Chr3:22706837 - go to primer design
BLAST e Value 8e-57
Hit Clone Code (BAC ID) T20K12
Hit Gene Code At3g61370 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation pre-mRNA-splicing factor CWC22-like protein (DUF3245)
Insertion Classification TS2TE (5')
Confirmation Status unknown


Last Updated on 10.06.2021 13:37