SimpleSearch - Line and FST details


Line specific information

 
Line ID 797G07
Vector Used pAC161
Line Availability available as T3 set from NASC (N476495)
Segregation Analysis 50:49:40
Confirmed for Hit At5g36000
Parent of DUPLO pair none
Parent of pair(s) 12321

Gene hit At5g36000

 
Sequence (A. th genome BLAST matches underlined) 
>55-K024971-022-797-G07-8409
AGCCATTTACATTGCAAAATTGGGAGGCGCACATAGACTATGGGATCCACCAAATATGAA
GCCAAATTGATGTTTCAAAAATCTGATCCAAGGTTTCAGCAACCACACGGGTTACGAACA
GGGATCGATATAAGCATCTAATTCTCATACAAATCATATTGATTCCAGAAGGTATCAAAG
ATGATTGATCGAACTCTATTTCCTATGGGATCCTCCCTATAGTGAGCCATGGTATCCTCC
CTATAGTGAGAGATAGGTAACGCAACGTACTATCCCAAAAGAGATATCTTTATGTGGACC
ACATACTTAAACAATGAAATACCACGAGCACGCGTTACGTCCCACCCCGTGTGAGTTTAA
AGTTATGGTTTCTTCGAGGATTGTGGCTATACTCTAGCCGAGCAACATTTTTATAACTCG
GenBank Accession BX949317 [GenBank]
Graphic View Graphic view of gene At5g36000
Predicted Position of Insertion Chr5:14140520 - go to primer design
BLAST e Value 3e-53
Hit Clone Code (BAC ID) MEE13
Hit Gene Code At5g36000 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation F-box protein RMF
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g08983

 
Sequence (A. th genome BLAST matches underlined) 
>55-K024951-022-797-G07-8409
TAGATACATGTTTACCACGATACAATGGGACGACGTAATGGAGCAACGATCTGAGAGATC
GACAAGAGGAAGACATGTCTTTTTACCACTTTTATTTCTGAAACCGGTAGGACAGTATCG
TACGCTATGGGATCCTCCCGATAGTGAGACGAGTGATCCATCTCTGTTTCCTATGGTATC
CTCCC
GenBank Accession BX949316 [GenBank]
Graphic View Graphic view of gene At1g08983
Predicted Position of Insertion Chr1:25617463 - go to primer design
BLAST e Value 3e-40
Hit Clone Code (BAC ID) T22E19
Hit Gene Code At1g08983 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation long noncoding RNA
Insertion Classification TS2TE
Confirmation Status unknown


Last Updated on 10.06.2021 13:37