SimpleSearch - Line and FST details


Line specific information

 
Line ID 810E08
Vector Used pAC106
Line Availability available as T3 set from NASC (N477720)
Segregation Analysis 50:23:21
Confirmed for Hit At3g20350
Parent of DUPLO pair 12554
Parent of pair(s) none

Gene hit At5g23390

 
Sequence (A. th genome BLAST matches underlined) 
>61-K025526-022-810-E08-8409
ACATGTAAGCCATTTTACAATTGAATATAGTCCTGCCCACTCGAACCGCCCCGTTTGTGC
CTCCCATATTAGTGACTAAACGCCCACCCTACTTAAAAAGGGCCATAAATATCAACACGA
TTCCTCGCTTCTACTATCCAAGCATGATGCCTAGGAAACCCGCCCAAGCGTGCGAAAAAT
TTGAAAAGTGCCTTTTCTTCTTCTTCGTGCTATCTTCGGCTCTAATGAGCTGAACAGGAG
CTGCTGGTACCCTAAACCACCATTCTCTTATCCGCCTCACTAGGGGGTCCCCCCTCGATT
GCGTCCACCCAACTTCCCTCGTGAACCACTCTACAAACGCAACCGTTATTAAGTACTTAA
CAGGAACAACCGCCAATATAACTGCCACAACCACAAGCGATATAGCCGTTGTATCTGTCG
CCTGAAAACATATCAAAGAGACAAAAGAGTTACTATTAACTGCAGACACCTATTTACCCT
ATGGG
GenBank Accession CR360332 [GenBank]
Graphic View Graphic view of gene At5g23390
Predicted Position of Insertion Chr5:7870565 - go to primer design
BLAST e Value 3e-136
Hit Clone Code (BAC ID) MKD15
Hit Gene Code At5g23390 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation polygalacturonase inhibitor (DUF639)
Insertion Classification TS2TE (3')
Confirmation Status unknown
Other FSTs Supporting this Hit CR360330 [GenBank]

Gene hit At3g20350

 
Sequence (A. th genome BLAST matches underlined) 
>61-K025525-022-810-E08-8409
AGCCATTTACAATTGAATATATCCCGTCTGACTCGTGGGACTCANTTCNTGCATCCCCTT
ATCTTGGGCCTAACCCGTGGATCTTCACTTAAAACGGTTCCATTACCCGCCGCATGAATA
GCAGATTCATCTAACCAAGCATGATGTCCCTGGAATCCCCCAGGAGTTGAGATGTCCTAT
AAATTTCTCTTTATTTTCCTTGCTGCTCTTCGCGGGGACACTGCTGGTCCTGCTGGAAAC
TTGGGTCCTCTGTTTTATTATCACCACCCTGATGACAAACATTCTGGCTTTCGAAGCAGC
AATTCCAGAAACAAGCATAGTAGATTCTTGTGTAAGGTTTGTTGATAATCTCAAACTTCT
ATGGGATCCTCCCTATACTGCGC
GenBank Accession CR360331 [GenBank]
Graphic View Graphic view of gene At3g20350
Predicted Position of Insertion Chr3:7097164 - go to primer design
BLAST e Value 3e-71
Hit Clone Code (BAC ID) MQC12
Hit Gene Code At3g20350 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation actin cytoskeleton-regulatory complex pan-like protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37