SimpleSearch - Line and FST details
Line specific information
| Line ID | 812G08 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N477936) |
| Segregation Analysis | 50:4:4 |
| Confirmed for Hit | At5g09840 At5g09315 |
| Parent of DUPLO pair | 2539 |
| Parent of pair(s) | none |
Gene hit At5g09840
| Sequence (A. th genome BLAST matches underlined) | >63-K025225-022-812-G08-8409 TTTACATGAACGGTAAGTTCATTTTTCTTGCAATTGCTTTTTTGTATCAAAAACTGGACC AAGTTCTGCGAATGCCAAATCCGAATCATCTTCTTTTGACTTGGCATTTGATGAAGGAGT TGAAAGAAACACGTCCCGTCATGCTATTCTCACTCCATGCATGACTCGAATCATAGACTG CGAGTTGCCGAAACCGAGCTTGCCTGCCGCGAAATGGTACCCGTACTCCTCTAAGAAGTC TTTCCTGAAACGAATCAAGCTATACCCTTCATGGTGTTCCTCTGTTATCTTCTTTATCAT CTTCTGACAATCCGCTATTGCATTACTTTTGTATCTTTCCAGCTCTTTCCGGTCCACAGA ACCAACAGAAACTCCAGCATGAGCAACGTTCTTGCCGCTTTTCTCACCATTTTGTTTCTG CCACTGTGATTTTGAAGAATCCGAGAAGATTGAGCTCAAACCGTTTGAAGCATGACGGTG GCCAGGGCTATGGGATCCTCCCTATAGTGAGACCTNCNNN |
| GenBank Accession | CR360510 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:3061700 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MYH9 |
| Hit Gene Code | At5g09840 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Putative endonuclease or glycosyl hydrolase |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g09315
| Sequence (A. th genome BLAST matches underlined) | >63-K025563-022-812-G08-8409 GAAGCCATTTGTAGATTGTAGCATTCGAGAACTGAATCCGATTACATTTGGAAGAGATAA GTCTGATTATTGTTTTACATCTGAGATATTATGAACATTGTCTCCCTCACCTTGTAGAGC TCGAAACAAATTATCAACGCTCCTGTCAGTTTCGCTTTTCGTTTGAAAATCTGAAGACAA TGTTGTATGATTCTCAGAGACTTTAGACGCTTGCAATGGTGAAATGCATGGAGTTACTGA TGTTGCTTCATCCATGCCTATGTAAAAGCAAATATATTTGAAAACTATGGGATCCTCCAT ATATAGAGTTAACACTACACATAAAAAAACTTAAATAGTTATTAAGGTAATCCTACCCAA AGGCGAAAATAAAACATAATAATCATAATTCACAATCAAAAAATCTAATAATAGTAACAA CACATTAATAGATTTATAACACAAAAAATACTATCTTAAATCCAATAATATCACATAACC ATCTTCATTCAAAATTTAAAATCTAATCTAATATAATATTATTCCAATAACAATAAAAT |
| GenBank Accession | CR398862 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:2890085 - go to primer design |
| BLAST e Value | 7e-128 |
| Hit Clone Code (BAC ID) | T5E8 |
| Hit Gene Code | At5g09315 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | vacuolar sorting protein 9 domain protein |
| Insertion Classification | Promoter |
| Confirmation Status | confirmed, show confirmation sequences |
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Last Updated on 10.06.2021 13:37 |
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