SimpleSearch - Line and FST details


Line specific information

 
Line ID 813E08
Vector Used pAC106
Line Availability available as T3 set from NASC (N478008)
Segregation Analysis 50:28:23
Confirmed for Hit At1g26380
Parent of DUPLO pair none
Parent of pair(s) 6612, 10680, 10682, 10697, 11055, 82438, 82492, 82512, 82547, 82580, 82597, 82621, 82632, 82652, 82653, 82654, 82655, 82656, 82657, 82658, 82659, 82660, 82661

Gene hit MQJ2

 
Sequence (A. th genome BLAST matches underlined) 
>61-K025644-022-813-E08-8409
CTAATCTTCTCGAATTATAGATCTTGTGTTTAATATATCATGAGATATGCCTGGGAGTTT
GTGTTAGCACTCTACGTCGGCCGTATGGTATCCTCCCTATAGTGCCTGCTTTTGGCTCTT
CACCGTTTCCTTGCCTTGTGGCTCATTGTCACTTTTACAATTCCTTTTGTTACTCTTATT
CCCGTATCATGCTTTGTGTCTCTTGTTTTAAAAACTTTTATTTTCGCTCTTCCCCTTCCC
CTTTCCGGTTCATATATTTTTGATTTCTGACTTTGGTTTCTCTCTCTCTCCCCCACTAAT
TAGATGACATTCAACTCCTGAGACTTTATCCTCCCCCACACTCTTTTTCTCCAACCCACT
ATAGCTTCTTTTCTTTCTAAAATTCACTTTCTCTTTTATTAT
GenBank Accession CR398940 [GenBank]
Graphic View Graphic view of sequence CR398940 of line 813E08
Predicted Position of Insertion Chr5:23635943 - go to primer design
BLAST e Value 2e-11
Hit Clone Code (BAC ID) MQJ2
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g26380

 
Sequence (A. th genome BLAST matches underlined) 
>61-K025603-022-813-E08-8409
TTTACATTGAATATTTCACGTAGATTTTCTTGATAGGAATGCCTCTGGATATTAATGGAA
CATTACACGGCGAGAGAACCATCGCGATTGTATTCTGGGCTCATGTTCTTGGGTCGAAGC
GATGATCTGATGGAGATAATGAACCAAAGCTTTCCTGAATTAGGGCTAATACGTGAATAT
TGTCTCGACCTGAGCTGGCTTATCACGACGTTGTTTTGGACTATGTTACCAGCGGGAATG
GGATCCTCCCTATACTGAGCGATCGCAAAGTATTTGAACGCAGGTATGGGATCCTCCCTA
TAGTGAG
GenBank Accession CR398939 [GenBank]
Graphic View Graphic view of gene At1g26380
Predicted Position of Insertion Chr1:9127664 - go to primer design
BLAST e Value 5e-64
Hit Clone Code (BAC ID) T1K7
Hit Gene Code At1g26380 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation FAD-binding Berberine family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37