SimpleSearch - Line and FST details


Line specific information

 
Line ID 816A09
Vector Used pAC106
Line Availability available as T3 set from NASC (N478249)
Segregation Analysis 50:22:22
Confirmed for Hit At5g60710
Parent of DUPLO pair none
Parent of pair(s) 84, 2874, 96747

Gene hit At1g31175

 
Sequence (A. th genome BLAST matches underlined) 
>65-K025606-022-816-A09-8409
NNNTTGGTAGTATCCGGACATGAGCCTTTACATTGAATATATCCTGTGGAGGCAAACTTG
GATTTGTCGAATAACAGATTAATTGGGACCCCTCCCCGTTTCTTTTCCATTATTGGCAGT
CATGATCAGCATCAAGAATTCGTAATCGAAGAGGCTGAAACTGAGGGAAAACAGTTCCAA
GGAAGAAAGATTGGGATTTTGGTTGCTGTCCTTGGTGGAGATGTATTTGTTCTTGTGTGT
ATAAACCGCTGCTCTTGCTGTTGTTCAAGAGAAAGGTCAGTGCCTCAAACTCGGCTTAAG
GTTGTGACAGAGATAACTCACACACCAGTCTCTCCTCCGAAGTTCTTGCTAGTGCAAGTG
AGTAACTTTGACTCAAATTGTAGACCTCCGCCTGGTGGCAATTGTCTTTCAGGAATTTAA
TATCCTTGTATGGGATCCTCCCTATAGTGAGA
GenBank Accession CR399221 [GenBank]
Graphic View Graphic view of gene At1g31175
Predicted Position of Insertion Chr1:11141522 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F28K20
Hit Gene Code At1g31175 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation cytochrome C oxidase biogenesis Cmc1-like protein
Insertion Classification TS2TE (3')
Confirmation Status unknown

Gene hit At5g60710

 
Sequence (A. th genome BLAST matches underlined) 
>65-K025638-022-816-A09-8409
CCTTTACATTGAATAATCCTGTCGATATTTCTTCGATCCATCTTCGTCTTCTCGGGCTCC
TGTCGATCTAGTCACAGTTCTTGATGTGAGTGGAAGCATGGCTGGAACAAAACTGGCGTT
GCTAAAGCGAGCAATGGGTTTTGTGATTCTCAATCTTGGTCCATTTGACCGTCTCTCAGT
TATATCCTTCTCCTCCACAGCACGTCGTAACTTCCCTCTTCGTCTCATGACCGAGACTGG
TAAACAAGAGGCGCTTCAGGCGGTTAATTCATTGGTCTCAAACGGAGGGACTAACATTGC
AGAGGGATTGAAGAAGGGCGCAAGAGTTTTGATCGATCGTAGATTCAAGAACCCGGTATC
TAGCATCGTATGGGATCCTCCCTATAGTGAG
GenBank Accession CR399222 [GenBank]
Graphic View Graphic view of gene At5g60710
Predicted Position of Insertion Chr5:24412344 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MUP24
Hit Gene Code At5g60710 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Zinc finger (C3HC4-type RING finger) family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37