SimpleSearch - Line and FST details
Line specific information
| Line ID | 817C07 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N478367) |
| Segregation Analysis | 50:32:26 |
| Confirmed for Hit | At1g52400 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 6240, 6248, 6263, 6264, 7786, 70271, 70351, 70559, 70632 |
Gene hit At1g52400
| Sequence (A. th genome BLAST matches underlined) | >51-K025722-022-817-C07-8409 GAAGCCATTTACAATTGAATATATCCTGACCGGGATACAGTTGCCCTTAACATAGAATTG AAGACATTAGATTCCTTCACGTTTGTAAACCACACTTTCGTATACATTTTCTTCCCTAAC ACTTCTTGGCACTGTTTCTTTTATTAATTTGATTTTTGAAACATATGTCAAAAGAAAAGA AAAGAATCGAAACATTTAATTAATTAATGTTTGTAATTGCACGTTGTATGGGATCCTCCC TATAGTGAGATTTCNNGGATACNNANAANACCTTGNANANAANCACAATGACNTAAACTT TGNAACACAAAATCACAACAAAAAATATTATATCCAAAGGCATCTCTTGAGTATGCACGA CGCCATTTGGTAAGTAAAACTTCAAATTAAACAATCAAAACATAATTGAATCCCGAAATA ATTAATCTGATGATATTTTAACTGGTTATTAGCAAGGACAAAGTGAACGTTACGGGATAC TTTGTGTGGTCTTTGATGGACAACTTTGAGTGGCAAAATGGNTATGGGATCCTCCCTA |
| GenBank Accession | CR399366 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:19517312 - go to primer design |
| BLAST e Value | 9e-121 |
| Hit Clone Code (BAC ID) | F19K6 |
| Hit Gene Code | At1g52400 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | beta glucosidase 18 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g65730
| Sequence (A. th genome BLAST matches underlined) | >51-K025709-022-817-C07-8409 ACCATTTACAATTGAATATATCCTGACCGAGGAACAATTGCCCTTAATATACAATTGAAG ACATTAAATTCCTTCACGTTTGTAAACCACACTTTCGTATACATTTTCTTCCCTAACACT TCTTGGCACTGTTTCTTTTATTAATTTGATTTTTGAAACATATGTCAAAAGAAAAGAAAA GAATCGAAACATTTAATTAATTAATGTTTGTAATTGCACGTCGTATGGGATCCTCCCTAT AGTGAGANNNNNNANNNNNNNNNNCNTANGGAANATCCAAGGGAACCGCCCTATATAGGG CCTCAATATTCCAATTTCAAAAATAACCCCTGAATTAGACTCACAAGTAAGAACCACGAC CTATAGAAATCCCATATAAAAGTATAAAATTAAAGTAAAGAAGATCTCAAGTATACAAGA AGAAAATAAATAGTTAATCTAATATTACTATACACAGATCGACTAACATATTTGTGAAAA ATAAAAAATTGACATTATATCATTAATTAAAATTTAAATTTCAGAGA |
| GenBank Accession | CR399365 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:26298468 - go to primer design |
| BLAST e Value | 2e-87 |
| Hit Clone Code (BAC ID) | MPA24 |
| Hit Gene Code | At5g65730 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | xyloglucan endotransglucosylase/hydrolase 6 |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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