SimpleSearch - Line and FST details
Line specific information
| Line ID | 822A03 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N478819) |
| Segregation Analysis | 50:19:18 |
| Confirmed for Hit | At5g12350 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 83928, 83935, 83939, 83940 |
Gene hit At2g26710
| Sequence (A. th genome BLAST matches underlined) | >17-K025507-022-822-A03-8409 CGCGAAGNAGCCATTTACAAGTGAATATATCCTGTCGCGGCTGCCGCTTTGGACCCGGTG GAGCTTGCAAGATGGTTTCCACGAGGAGCTGAGCCGGTTAGGCAGATTATTTCCTTTGAG AACTGAGCCTTGTGCACCTTCCCCCCGACACGGTGAGCGACGGGGCAACCGATTGATCCA CATGGGACTTTTAAACCTCCTCCGTCGGATGGCGTTGCGAGATAATCAGTCGATCCGTGA GATCAGCCGACGCACCGGGCAGGCGCGCAACACGATCGCAAAGTATTTGAACGCAAGTAT GGGATCCTCCCTATAGTGAGAGAGAAAAATCTACTGTTAGTTCTTTTTCTCAATTTCCTC TGTTTTTTTATTTTTCACATTCAGACTCTTCTTATGGTTTTACTCTGTTTCTAATCAGTC AGATTTTTGTTATTCGAAAACCTCTTTTGTAAAAGTTGAAACATAAAACTTTTTGTATAT ATAAAGAACACAAACTCTTGTGTCGTTTTTTTTTTTTGTA |
| GenBank Accession | CR360625 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:11380695 - go to primer design |
| BLAST e Value | 3e-71 |
| Hit Clone Code (BAC ID) | F18A8 |
| Hit Gene Code | At2g26710 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Cytochrome P450 superfamily protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At5g12350
| Sequence (A. th genome BLAST matches underlined) | >17-K025530-022-822-A03-8409 NNNTTCGTGGATATCCGGACATNAGCCATTTACAATTGAATATATGCAGTATTTTCTTCC GCTTTGATCCCGTTGAAGTGACGACGAGTTCTATTCTGAAGCGCTTGGACGGTTAGCTAG ATTCTTCCTATTGAAATCCATGACACGTGTGCCACTCCCCACATACGAAGAACCAGAAGT ATGACTTCATTATCAGTCTTGTCTCTCCCATACCCAGTGGACGCTCTCAACGGCGTGCAC TTAACATAACCCATTCTTTCAATCCAGTATTTGGAGCATCACACAAGTTCTTCTCAGCTT CTGTTCCTGCTTCTCTAATTGCGTCTCGGGCAACTTCCCCAATATCGAGGCGTCCTATTC CACCCCGGTCAACTACACCGACTCCCACTCTTTCAGGACTAGCCACACCAAAATTTGTAG TGGATGATACTAAGAGAACCAATGATAACCTAAGCCAAGAGGTCGTTAAGCTAAGATCTC AGGTATATTTCTCTTATCTCCAAAATCCTTCCCACATTCTTTGCTGCAAAAAGATGTAGT TGGTGA |
| GenBank Accession | CR360626 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:3999079 - go to primer design |
| BLAST e Value | 1e-172 |
| Hit Clone Code (BAC ID) | T2L20 |
| Hit Gene Code | At5g12350 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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